Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g01596 ATGGATTCTTTGCGCAAGTCGATCGAGAAGGTACAGTCACGATTCGATTTCGAGGTTCCTGAACCGGCAGTTCGCCTAGCCCTAACGGAATGTCGGTTGGACGAGGACGCTGCGGTGGAGTTTCTCAACAACAATCCCGGGTTTCTGGCCCGGCCCGTCACGGTGGTTCGGGCTGTCACTAGCACTGGCTCGAGGGTTTTGGCACCGACTCCGGTAAAGCAAGAGGGGTTCAACGACTCTCATATGTCTGATGAAATTAGTCTGAAGAGCAATGTGAAAGAAGAACCCGTTGATTTGACGGTGGTTCGGGCCGTCACTAGCACTGGCTCGACGCCGGTAAAGCAAGAGGGGTTCGACGACTCTCATATGTCTGATGAAATGAGTCTGAAGAGCAATGTGAAAGAAGAACCCGTTGATTTGACGATTGAGGATCGAAAGCCAGCCAATGTAGAAAATGGTTCAGATAATTCTCATGAGGTGGCACAACCGATTGAGGAGTTTAATGTGAAGAAGGAATCGGAGGAAGATGATGTTTCTAGGGCATTGCCGTCCCAAACCCAGGTGCAAGAGTCTACTTGTAATCGGAAAGCTTCATGGGAAGCTGGATATGAAGAGTTCCTTAAGGCTTCAAATACTAAAGTTATTTCAAAGGAAGAATATCTGAAGTCCACGGTGGAACCACAGCCACCAGTTCAGGCTTCTGTGGATAAGGTCTCGGAGAAGAAACAGGTGGCTACTGCTGATTGCGGTGAAGTGAAAATCGTCAAAGAAGTTGGTTTGTTTCCATGTTTTCGGAACTCTTCCCAGGGTAAAAATAAAAACGCTGAACTTGAACTTCCTAGACCTCCAAACGTGGAGGATGGGGAATTTCCAGAATATCCAGACTGGTTTTTGGCGGGACGGACAATAATCACTGCACTTTCAACTACTAAAGGGAGGAAATTAGTGGACAACGAGATTGTTCATTTCGATTTTCGGTCTGCATTTGCCAAACGCGACTCGAAATGGATTCTTCGCATTTCAACCAAGCGTTCTGGAGAGGTTGGACGGGTTAATATGGAATGGGCTAATGAAGTTGTCCCACTTGTTCGTTCTGCAAAGGTCAAGATTGTAGGCCGCTGCGTAGCTGCACCACCTGTCTTACAGATGATGCAAGATGTCATGTTGTGTGTAAGCTTTTACATCCACCAAAGCGTATTCTCTTCAGAAGTCAATACTTCATGGAGGCTTGATGGCTCTACGTACATTGATCCTTCTGTTTATCCTCTTCCCACTGTGTTCAAATTGATGGAAATGAAGCCATATCAGAATGCCTCTTTTACCCCAGAGGAACTTAATTCTAGGAAACGTTTGTTCAGTATCAAGGGTAATAAAGATGAAGCTGCGTCAGATTTGCCTGTCTTGAAACGGAGAAAGGGTTGTTCTCCTGATCAAGATGATGAACAAGCTGTGTCACAGTCATCTTTGGATAAGCTTGTTGGAGCCGCTGAAGTCTACGATTTGGAGGAGATGGAAGGTCCAAGTACACTGATGTGTGTTCTAAAGCCTTACCAGAAACAAGCGCTGTATTGGTTGTCAGAACTGGAAAAAGGAACTAATGCTCAGAATGCTGAAAATACTGTTCATCCTTGCTGGGCATCCTATTGTATAAATGATGAGAGGGTTCCCACTATTTATGTAAACAACTTCACTGGGGAAGTAACAACAAATCTCCCACCTGCGTTTCGATTGCCAAGAGGAGGGATTCTCGCAGATGCTATGGGACTTGGGAAGACTGTCATGACTATTGCTCTAATCCTTGCAAGACAAGGGAGAGGGGATAATGTTGGTCTTTCAAAGAAGATGAATCAAGTTTCTTATGCTGACCCCACATTCAAAGTTGATGGTGGCACTCTTGTTGTTTGTCCCATGGCATTGCTAGGTCAATGGAAGGATGAGCTTGAAACCCATTCCAAGCCGGGAAGCATATCCATTTTTGTACACTACGGTGGGGATAGAACCAATGATCCTCGGGTGATCTCAGGGCATGATGTTGTTTTAACAACTTATCGTGTCCTTGGAGATGCATATAAAACTTATAGAGAGAACAGCATCTACCATAAGGTCAACTGGCATAGGGTGGTCCTAGACGAAGCTCATTCCATTAAAGCCCATAAATCACACGCCGCACTAGCTGCTTTTACCCTGACCTCACACTGCCGTTGGTGTCTTACTGGAACCCCTCTGCAGAATAGCTTGGAAGACCTATTCAGCCTCTTGTGCTTCTTGCATGTTGAACCATGGGGCAATTTTGCTTGGTTTAATAAATTGGTTCAACGGCCTTATGAGAATGGTGATCCTCGAGGCTTGAAATTAGTCAAGGCCATTTTGAAGCCATTGATGTTAAGAAGAACAAAGGAAACAAAGGATAAATGCGGAAGGCCCATACTTGTTCTTCCACCGATTGACATTCAATTGATTGAGTGTGAACAGTCAGCAGCTGAAGCTGAATTGTATAATGCCCTCTTCAGGAAATCTAAACATCAATTCGACCAGTATGTTGGACAAGGAAAAGTTCTCAGCAACTATGCCAACATTCTTGAGTTATTATTGCGGCTGAGACAATGTTGTAACCATCCGTTTCTGATCACAAGCCGAAGTGACTCAAAGAAACCTGTGGACTTTGACATACTCGCGAAAAGACTACTCGAGTTCAATACTAATTCTACAAGTCAGTGTGCATATGTTACTGAGGCCATTGAGGCTCTTCGCAAGGGTGAAAAACTAGAATGCCCAATATGCTTAGAATCTGCTGATGATCCTGTGTTCACTCCATGTGCACACAGAATGTGTAGGGAGTGCTTGCTTTCTAGCTGGAGCACCCAAATCAGTGGTCCTTGCCCTCTTTGCCGTCATAAGATAAACATAACCGATCTAATCAATTGTCCATTTCAGAACAAGTTTGTGGTTTCTGATGTTGAGAAGGACTGGAAGGAGTCTACCAAGGTTTCAAAGCTTCTGGAAAACTTGGAACACATTGAGAGATATCGCCCCGCTGAAAAAAGCATTGTGTTCAGCCAGTGGACGGCCTTTTTGGACCTCCTGGAGATTGCTTTGAAGAAGAAAGGAATTGGGTATTTTAGATTTGATGGGAAACTGCAACAGAAGAATAGGGAAAGAGTTTTGAAGGAGTTTAATGAATCCAGAGGGGAAAGGGTTTTATTAATGTCACTTAAAGCTGGTGGTGTAGGCTTGAACTTAACTGCAGCCTCAAATGTTTTCATGATGGATCCATGGTGGAATCCTGCGGTTGAAGAGCAAGCAATTATGAGAATCCATCGTATAGGACAAAAGCGAACAGTTCTGGTTAGAAGATTCATTGTCGAGGGTACGGTGGAAGAGAGGTTGCAACAAGTGCAGGCCAAGAAGCAGAAGATGATATCTGGAGCCCTCACAGAGGATGAGGTTCGGTCAGGCAGGATTGAAGACCTCAAGATGCTGTTCAGTTAA 3489 0.4468 MDSLRKSIEKVQSRFDFEVPEPAVRLALTECRLDEDAAVEFLNNNPGFLARPVTVVRAVTSTGSRVLAPTPVKQEGFNDSHMSDEISLKSNVKEEPVDLTVVRAVTSTGSTPVKQEGFDDSHMSDEMSLKSNVKEEPVDLTIEDRKPANVENGSDNSHEVAQPIEEFNVKKESEEDDVSRALPSQTQVQESTCNRKASWEAGYEEFLKASNTKVISKEEYLKSTVEPQPPVQASVDKVSEKKQVATADCGEVKIVKEVGLFPCFRNSSQGKNKNAELELPRPPNVEDGEFPEYPDWFLAGRTIITALSTTKGRKLVDNEIVHFDFRSAFAKRDSKWILRISTKRSGEVGRVNMEWANEVVPLVRSAKVKIVGRCVAAPPVLQMMQDVMLCVSFYIHQSVFSSEVNTSWRLDGSTYIDPSVYPLPTVFKLMEMKPYQNASFTPEELNSRKRLFSIKGNKDEAASDLPVLKRRKGCSPDQDDEQAVSQSSLDKLVGAAEVYDLEEMEGPSTLMCVLKPYQKQALYWLSELEKGTNAQNAENTVHPCWASYCINDERVPTIYVNNFTGEVTTNLPPAFRLPRGGILADAMGLGKTVMTIALILARQGRGDNVGLSKKMNQVSYADPTFKVDGGTLVVCPMALLGQWKDELETHSKPGSISIFVHYGGDRTNDPRVISGHDVVLTTYRVLGDAYKTYRENSIYHKVNWHRVVLDEAHSIKAHKSHAALAAFTLTSHCRWCLTGTPLQNSLEDLFSLLCFLHVEPWGNFAWFNKLVQRPYENGDPRGLKLVKAILKPLMLRRTKETKDKCGRPILVLPPIDIQLIECEQSAAEAELYNALFRKSKHQFDQYVGQGKVLSNYANILELLLRLRQCCNHPFLITSRSDSKKPVDFDILAKRLLEFNTNSTSQCAYVTEAIEALRKGEKLECPICLESADDPVFTPCAHRMCRECLLSSWSTQISGPCPLCRHKINITDLINCPFQNKFVVSDVEKDWKESTKVSKLLENLEHIERYRPAEKSIVFSQWTAFLDLLEIALKKKGIGYFRFDGKLQQKNRERVLKEFNESRGERVLLMSLKAGGVGLNLTAASNVFMMDPWWNPAVEEQAIMRIHRIGQKRTVLVRRFIVEGTVEERLQQVQAKKQKMISGALTEDEVRSGRIEDLKMLFS 1162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g01596 1162 Pfam Helicase conserved C-terminal domain 997 1109 IPR001650 -
Accr12g01596 1162 Gene3D - 571 798 IPR038718 -
Accr12g01596 1162 ProSiteProfiles Zinc finger RING-type profile. 924 964 IPR001841 -
Accr12g01596 1162 CDD DEXDc_SHPRH-like 514 797 - -
Accr12g01596 1162 FunFam DNA repair protein RAD5B 569 798 - -
Accr12g01596 1162 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 501 797 IPR027417 -
Accr12g01596 1162 MobiDBLite consensus disorder prediction 118 152 - -
Accr12g01596 1162 SMART HIRAN_2 297 395 IPR014905 GO:0003676|GO:0008270|GO:0016818
Accr12g01596 1162 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 917 973 IPR013083 -
Accr12g01596 1162 SMART ultradead3 510 772 IPR014001 -
Accr12g01596 1162 Pfam Zinc finger, C3HC4 type (RING finger) 924 963 IPR018957 GO:0046872
Accr12g01596 1162 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 572 759 IPR014001 -
Accr12g01596 1162 SMART helicmild6 1026 1109 IPR001650 -
Accr12g01596 1162 MobiDBLite consensus disorder prediction 164 179 - -
Accr12g01596 1162 SUPERFAMILY RING/U-box 919 972 - -
Accr12g01596 1162 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 810 1154 IPR027417 -
Accr12g01596 1162 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 289 1161 - -
Accr12g01596 1162 SMART ring_2 924 963 IPR001841 -
Accr12g01596 1162 ProSitePatterns Zinc finger RING-type signature. 939 948 IPR017907 -
Accr12g01596 1162 Pfam SNF2-related domain 517 875 IPR000330 GO:0005524|GO:0140658
Accr12g01596 1162 CDD RING-HC 922 963 - -
Accr12g01596 1162 CDD SF2_C_SNF 993 1120 - -
Accr12g01596 1162 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 998 1158 IPR001650 -
Accr12g01596 1162 MobiDBLite consensus disorder prediction 110 189 - -
Accr12g01596 1162 Gene3D - 813 1162 IPR027417 -
Accr12g01596 1162 Pfam HIRAN domain 304 389 IPR014905 GO:0003676|GO:0008270|GO:0016818
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g01596 Accr-Chr12 24671461 24677839 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g01596 281 1161 RAD5 or RAD16-like Gene Family AT5G43530 63.363 0.0 1196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Accr12g01596 SNF2_N 3.1e-80 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g01596 K15505 - qsa:O6P43_003250 1287.71