Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g01561 ATGGCAAGTTTGAATCTGAAGGAGACGGAGCTGTGTCTGGGATTACCCGGCGTCGGCGGTGAGGTTGTGGAAACCGCTACCCCAAAGGCCTCATCAGGGAACAAGAGAGCCTTCTCTGCAACTGTTGATCTCAAGCTCAATCTTGTCGATGATTCCAAGGATGATGCGGTCGGCAAAGGAGAAGATCTCATAAAAAATCATCAAGACCACAAGAACATCATCTCCTGCTCTAAGGAGGACCCAGCTAAGCCACCTGCCAAGGCACAAGTGGTGGGTTGGCCACCAGTGAGGTCATACAGGAAGAACGTGATGACTCAGAAGGTGAGCAGCGAGGAGGAGGGGAACACTGAGAAGAAGACTGCAGCGGCGACCGCCAGCGGAGGATATGTGAAGGTGTGTATGGACGGAGCACCCTATCTTCGGAAGGTGGACTTGAAGATGTACAAAGGCTACCAACAACTTTCTGATGCCTTGGCCAAAATGTTTAGCTCCTTCACCATGGGGAAGTATGAGGGGGCCCATGAGCAAGGAATGATAGACTTCATGAATGAGAGCAAGTTGATGGATCTGCTGAACAGCTCTGAGTATGTGCCAACCTATGAAGATAAGGATGGCGATTGGATGCTCGTTGGCGATGTCCCATGGCAGATGTTCGTTGATTCATGCAAGCGTCTACGAATAATGAAAGGATCAGAAGCCATTGGATTGGCCCCAAGAGCCATGGAAAAATGCAAAAGCATCAGAACCTGA 750 0.5013 MASLNLKETELCLGLPGVGGEVVETATPKASSGNKRAFSATVDLKLNLVDDSKDDAVGKGEDLIKNHQDHKNIISCSKEDPAKPPAKAQVVGWPPVRSYRKNVMTQKVSSEEEGNTEKKTAAATASGGYVKVCMDGAPYLRKVDLKMYKGYQQLSDALAKMFSSFTMGKYEGAHEQGMIDFMNESKLMDLLNSSEYVPTYEDKDGDWMLVGDVPWQMFVDSCKRLRIMKGSEAIGLAPRAMEKCKSIRT 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g01561 249 Gene3D - 122 242 - -
Accr12g01561 249 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 4 235 IPR003311 GO:0005634|GO:0006355
Accr12g01561 249 FunFam Auxin-responsive protein 122 240 - -
Accr12g01561 249 Pfam AUX/IAA family 8 239 IPR033389 -
Accr12g01561 249 ProSiteProfiles PB1 domain profile. 127 230 IPR000270 GO:0005515
Accr12g01561 249 SUPERFAMILY CAD & PB1 domains 126 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g01561 Accr-Chr12 23484080 23486287 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g01561 117 238 B3 DNA Binding Superfamily AT4G23980 29.508 2.91e-09 55.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Accr12g01561 AUX_IAA 6.5e-85 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g01561 K14484 - rcu:8280179 327.405