LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Accr12g01530	ATGGAACCAGGCGCTCCCCCACCGCCGCCGCCGTCACCTCCGACCACACCCTCTCCATCCTCCTCCGCCTTCACCATCCTCGGGAAGTATCAATTGATCCGTCTTTTAGGTCGTGGCAGCTTCGCCAAGGTCTATCAGGCTCGATCCCTCATCGACGGCTCCATCGTTGCAGTGAAGATCATCGACAAGTCCAAAACCGATCCCGCCATGGAGCCGAGGATTGTTCGTGAGGTCGATGCAATGCGACGGCTTCACGACCATCCTCATGTTCTTAAAATCCATGAGGTTTTGGCTTCGAAGACGAAGATCTACCTCATAGTGGAGTTCGCTGCCGGCGGGGAGTTGTTCTCGAAAATCTCGCGTAAGGGGAGGATGACGGAGGTGGTGGCGAGGCGGTACTTCCAGCAATTGGTTTCCGCCCTCTGTTTTTGCCACAAAAACGGTGTCGCTCACCGTGATGTGAAGCCTCAGAATCTTCTTTTGGACCACGAAGGGAATCTGAAGGTCTCCGATTTTGGACTCTCCGCCTTGCCGGAACAGCTTAAAAACGGGTTGCTCCACACGGCTTGTGGCACGCCGGCTTATACCGCGCCGGAGATCCTCTTCCGGCGCGGATACGACGGCTCAAAAGCCGACGCGTGGTCCTGCGGGCTTATACTCTACGTACTGCTCGCTGGCTACCTCCCGTTCTCGGACGCCAACATTCCTGAGATGTGCAAGAAGATCAGCCGGCGCGATTACAAGTTCCCGGACTGGATTCCCAAGCCAGCGCGGTTCGTGATTCACCGACTACTTGACCCGAATCCCAAAAACCGGATGAGTCTAGAATCTCTATATCAAAACTCGTGGTTCAAGAAATCGCTTAAGCCCCAACCCGACGATAGCTTATTCGAGTCGTGTCCCACTGCGAAATCGTATCAAAAGCTCGAAAGAATGGGGTCAGGCGTGAACGCCTTCGATATAATCTCGATGTCTTCAGGTCTGGACCTGACAGGGCTGTTCGAAACGACGACGGATAACAAGAGAGAGAAGATATTCACATCGAATGCTTCACTGGTAGCAGTGGAAGAGAAAGTGAAGGAAGTGGGAGGAATTTTAGGGTTCAAAGTTGAAATCGGTAAAAATGGAGCAATTGGATTAGGGAAAGGGAAGGTAGTTCTTGTGGTGGAGGTGTTTGAGATAGTTCCTGAGTTGTTAATGGTGACTGTGAAAGTGACTAATGGTGGGTTTGAGTTCGATGAGCTTCACTGGGGAGACATGAAATCTGGCCTTCAAGATGTTGTTCTTTCATGGCACAATGAATCACTGTAG	1311	0.5195	MEPGAPPPPPPSPPTTPSPSSSAFTILGKYQLIRLLGRGSFAKVYQARSLIDGSIVAVKIIDKSKTDPAMEPRIVREVDAMRRLHDHPHVLKIHEVLASKTKIYLIVEFAAGGELFSKISRKGRMTEVVARRYFQQLVSALCFCHKNGVAHRDVKPQNLLLDHEGNLKVSDFGLSALPEQLKNGLLHTACGTPAYTAPEILFRRGYDGSKADAWSCGLILYVLLAGYLPFSDANIPEMCKKISRRDYKFPDWIPKPARFVIHRLLDPNPKNRMSLESLYQNSWFKKSLKPQPDDSLFESCPTAKSYQKLERMGSGVNAFDIISMSSGLDLTGLFETTTDNKREKIFTSNASLVAVEEKVKEVGGILGFKVEIGKNGAIGLGKGKVVLVVEVFEIVPELLMVTVKVTNGGFEFDELHWGDMKSGLQDVVLSWHNESL	436

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Accr12g01530	436	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	149	161	IPR008271	GO:0004672\|GO:0006468
	Accr12g01530	436	SMART	serkin_6	30	284	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Accr12g01530	436	MobiDBLite	consensus disorder prediction	1	18	-	-
	Accr12g01530	436	PANTHER	CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED	24	404	-	-
	Accr12g01530	436	SUPERFAMILY	Protein kinase-like (PK-like)	26	296	IPR011009	-
	Accr12g01530	436	MobiDBLite	consensus disorder prediction	1	21	-	-
	Accr12g01530	436	Pfam	NAF domain	316	371	IPR004041	GO:0007165
	Accr12g01530	436	Gene3D	Phosphorylase Kinase; domain 1	18	111	-	-
	Accr12g01530	436	FunFam	Aurora kinase A	23	113	-	-
	Accr12g01530	436	Pfam	Protein kinase domain	30	284	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Accr12g01530	436	ProSitePatterns	Protein kinases ATP-binding region signature.	36	59	IPR017441	GO:0005524
	Accr12g01530	436	Gene3D	Kinase associated domain 1, KA1	313	429	-	-
	Accr12g01530	436	Gene3D	Transferase(Phosphotransferase) domain 1	112	302	-	-
	Accr12g01530	436	CDD	CIPK_C	317	425	-	-
	Accr12g01530	436	ProSiteProfiles	Protein kinase domain profile.	30	284	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Accr12g01530	436	FunFam	Non-specific serine/threonine protein kinase	20	312	-	-
	Accr12g01530	436	FunFam	Non-specific serine/threonine protein kinase	312	429	-	-
	Accr12g01530	436	ProSiteProfiles	NAF domain profile.	311	335	IPR018451	GO:0007165

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Accr12g01530	Accr-Chr12	22727860	22729170	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Accr12g01530	1	434	Miscellaneous Gene Families	AT3G23000	56.561	3.21e-167	475

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CAMKL-CHK1	Accr12g01530		Pkinase	1.1e-67	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Accr12g01530	K12761		-	gmx:100784173	589.341