Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g01527 ATGGTAGGACTGGAACTCATACCAGTGGGTACAATTCTGGCTGTGCTTACCAATCAGATTATTAAAACAGCTAATGCAGCATCTGATGTTCTTGTCGAAAAAGAAACTTTCAAGGTTCTTTCAAAACACTTGTACGATATTGAACCGGTTCTAAAGGAATTACAGCTTCAAGAATTGAATGAGTCTCAAGCTGCAAGAATTGCTCTGGAGTCTCTTGAAGAAGATGTGAAAAGGGCAAATAAAGTGGTTGATAAGTACAGGAACCGTGGTCGTTTTTACTTGCTGGTTAATTGCAGGAGCATAGTTCATGAAGTTGAAGAAGTCACAAGAAGCATTGGAAAGTCCCTGGCTGTACTATCACTTGCAAATACCGAAGTTTTATCAGGAATTTCTGATCAGGTCGATAGATTACAAAATGAGATGCAAAGGGTGGAGTTTGAGGTGTCACATTCTCAGCTTCAAATAGTGGAGAGGTTGGACCAGGGCCTTAGGGAGCAGAAACTAGACCAGGCTTTTGCAAATGATATGCTTGAAGAAATCGCAAGGGCAGTTGGAGTGCCGGTAGATCCTTCAGAGATAAGCAAAGAGCTGGCCAGCATTAGGAAAGAAAAAGAAGAAGCTGCTGACAGGAAAGAAAGAGCCGAGGTCTTCTTCTTGGAGCAGGTCATTGAATTACTATCCCGAGCTGATGCTGCAAGAGATTATGAAGAAGTTAAGAAACAATACTATGAAAGACTTCAGGTGATAGAAAGATACAATTCAAGGGAGAAATATATAGAGCCGCTTAATTCTTTCATTTGTTGTATAACTGGGACCGTTATGGCAGATCCCGTAAGCCTTTGCACTGGTACTACTTGTGAGAGATATGCCATTGAGGCTTGGTTTGACACTGGTAAGAGGACTGACCCTGAAACTAAAGAAGCACTTGAAGATACTAAGTTGAGATCTAATGTTCCACTTAGACAATCCATAGAGGAATGGAGAGAACTTAATTACTGCCTTACAATCAGGTCTATCGGGGAAGACCTTTTATCAAATTCCAACTTATCCGTGCTAGAATCCTTGAGAAAAGTGCAGGATCTCATAAGAGACAATTCTATAAACAAGGATTGGATTTCCATAGGAGGGCTTACCGACATTATTATCTCTATCCTTGGGAAAACTGTTAATGGAGAAGTGAAGATCAACATTTTGAGTACTTTGAATGATGCAGTAGAAGGGCACATGAGAAACAAGGACAAAGTATCAGAATCTCAAGGATGGGATCACATTATTTGCAACTTGGGCAGTGACCCCAGAATTTCAAAAGCTGCAATTAAGTTGCTGTATGAGTTACTGCAAGATCGAACAGGTTGGAATGTGTCTCTCTGCAGAAAACTCTCTCAGCATGACAGTGCAATTTCTCTCCTCGTTACCCTTCGTAAGGGTCCAGAAGAGGAGTCAGCTGAGATTGTGGAAAAGATTTTGATGGAGCTTTTTCACATAGATGAGGTCAACATTTCTAGTGCTGCCAAGTTTGGCTGGTATAAACCGCTTGTTGATCATATGGTTCAAGGAGTAGAATCTTCAAGGATATCAATGGCAAAAACCATTGTGAATATGGAGTTGAGTGATTCAAATTTGAACCTCCTTGGTGAAGAAGGAGTTATATCTCCTTTGCTTGAAATGCTGTTTGGCAATATTGAATTAAAAGAAGCCTCGTTATCTGTGCTGGTTAAACTGTCAGATTCCCGTGCCAATAAAAGGATTATAGCTGCGTCAGGGGGAGTTCCTATCATTCTAGAACAAATTTTCTCTCCTCCCATGCGAACCCTCATTGCTATCAAATGCTCTGAAATCCTGGAGAAACTTTCTGCTGATGAAGATGGAATTGATTTCTTTGTTGACAGTGAAGGGAAACAACTTGAGTTAGATTCCATTATCATCAAATTACTTGCTCTTCAGCAGAGTCCCACCTTAGCCTACAATATCCGCAAGCCTTCTTTGCGTGCACTTCTTGGAATTTGCAAGTTTGAGACTGGTTTAGTCAAGAAGGCTGTCCTGGCTGCCAGGGGTGTATCTCTAATCCTCCCCCTCCTTGATGACTCCGATTCAGAAATCAGAGAGACCGCCATAAACCTTCTCTTTCTTTTATCCCAACATGAGCCAGAGGGAGTGGTTGAATACCTCTTCAGGCCAAGGAGGCTGGAGGCTTTGGTGGGATTTCTAGAGACTGATGACAATGATGTTCAGATGGCTGCTGCTGGTTTAATAGCAAACCTACCGAAATCCGAAAAAGAGCTCACTATGAAGCTGATTGAATTGGGTGGACTTGATGCAATCATATGCATTTTGAAAACTGGAACAATGGAAGCTAAAGAAAATGCTCTCAGTGCACTCTTCAGGTTTACAGATCCCACTAACATTGAGTCGCAGCGTGATTTGGTTAAGCGTGGGATATATCCTTTGCTCGTGAACTTTCTCGACACTGGTTCAATAACAGCAAAGGCTAGAGCAGCAGCCTTCATCGGAGATCTTTCTACAACCACCCCAATGCTCACGCTCACAGCCAAATCAACTGGCTGCTGGTGTTTTAGACCATCAAGAGCTCATTTATGCCCAGCACATGGTAGTGTATGCAGTGTGAGCAACACATTTTGTCTCTTGGAAGCACAAGCTTTGCCTGGTTTAGTAAATCTCTTATGTGGGGAGGTCGATGTAACTGCTTATGAAGCAATACAAACACTTTCAACATTGGTTTTGGAAGATTATCCTCAAAGGGGAGCTCATGTTTTGAACGAATCCAATGCTATAAAACCCCTTATGGATATTCTGACATGGGGTTCTGATTCTCTTATGGCTGAGGCTCTAGGACTCTTGGAGAAGGTCTTTGTATCAAAAGAAATGGTGGAATTGCACGGCGCAACAGCTAGATCGCGTTTGGTTGGTTTAACGGGGATGAATATATATGGAGATGGCCATCTCAGAAGAAAAGCTGCTAAGGTATTGTCATTGATCGAACGGTATTCAAGGTCGTCATCTGCTGCTGTTTCTGGAGTTCTGGAGTGA 3048 0.4213 MVGLELIPVGTILAVLTNQIIKTANAASDVLVEKETFKVLSKHLYDIEPVLKELQLQELNESQAARIALESLEEDVKRANKVVDKYRNRGRFYLLVNCRSIVHEVEEVTRSIGKSLAVLSLANTEVLSGISDQVDRLQNEMQRVEFEVSHSQLQIVERLDQGLREQKLDQAFANDMLEEIARAVGVPVDPSEISKELASIRKEKEEAADRKERAEVFFLEQVIELLSRADAARDYEEVKKQYYERLQVIERYNSREKYIEPLNSFICCITGTVMADPVSLCTGTTCERYAIEAWFDTGKRTDPETKEALEDTKLRSNVPLRQSIEEWRELNYCLTIRSIGEDLLSNSNLSVLESLRKVQDLIRDNSINKDWISIGGLTDIIISILGKTVNGEVKINILSTLNDAVEGHMRNKDKVSESQGWDHIICNLGSDPRISKAAIKLLYELLQDRTGWNVSLCRKLSQHDSAISLLVTLRKGPEEESAEIVEKILMELFHIDEVNISSAAKFGWYKPLVDHMVQGVESSRISMAKTIVNMELSDSNLNLLGEEGVISPLLEMLFGNIELKEASLSVLVKLSDSRANKRIIAASGGVPIILEQIFSPPMRTLIAIKCSEILEKLSADEDGIDFFVDSEGKQLELDSIIIKLLALQQSPTLAYNIRKPSLRALLGICKFETGLVKKAVLAARGVSLILPLLDDSDSEIRETAINLLFLLSQHEPEGVVEYLFRPRRLEALVGFLETDDNDVQMAAAGLIANLPKSEKELTMKLIELGGLDAIICILKTGTMEAKENALSALFRFTDPTNIESQRDLVKRGIYPLLVNFLDTGSITAKARAAAFIGDLSTTTPMLTLTAKSTGCWCFRPSRAHLCPAHGSVCSVSNTFCLLEAQALPGLVNLLCGEVDVTAYEAIQTLSTLVLEDYPQRGAHVLNESNAIKPLMDILTWGSDSLMAEALGLLEKVFVSKEMVELHGATARSRLVGLTGMNIYGDGHLRRKAAKVLSLIERYSRSSSAAVSGVLE 1015
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g01527 1015 ProSiteProfiles U-box domain profile. 260 334 IPR003613 GO:0004842|GO:0016567
Accr12g01527 1015 SUPERFAMILY ARM repeat 650 1000 IPR016024 -
Accr12g01527 1015 SUPERFAMILY ARM repeat 336 720 IPR016024 -
Accr12g01527 1015 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 548 589 IPR000225 GO:0005515
Accr12g01527 1015 Pfam U-box domain 264 329 IPR003613 GO:0004842|GO:0016567
Accr12g01527 1015 Gene3D - 859 1010 IPR011989 -
Accr12g01527 1015 Coils Coil 127 154 - -
Accr12g01527 1015 CDD MLKL_NTD 10 145 - -
Accr12g01527 1015 Coils Coil 62 89 - -
Accr12g01527 1015 CDD RING-Ubox_PUB 265 314 IPR045210 -
Accr12g01527 1015 Gene3D - 537 852 IPR011989 -
Accr12g01527 1015 Gene3D - 8 123 IPR036537 GO:0007166
Accr12g01527 1015 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 241 334 IPR013083 -
Accr12g01527 1015 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 11 1007 - -
Accr12g01527 1015 Gene3D - 335 534 IPR011989 -
Accr12g01527 1015 SMART Ubox_2 264 327 IPR003613 GO:0004842|GO:0016567
Accr12g01527 1015 SUPERFAMILY RING/U-box 248 330 - -
Accr12g01527 1015 SMART arm_5 874 914 IPR000225 GO:0005515
Accr12g01527 1015 SMART arm_5 758 798 IPR000225 GO:0005515
Accr12g01527 1015 SMART arm_5 715 756 IPR000225 GO:0005515
Accr12g01527 1015 SMART arm_5 537 576 IPR000225 GO:0005515
Accr12g01527 1015 SMART arm_5 673 713 IPR000225 GO:0005515
Accr12g01527 1015 SMART arm_5 577 619 IPR000225 GO:0005515
Accr12g01527 1015 SMART arm_5 918 958 IPR000225 GO:0005515
Accr12g01527 1015 SMART arm_5 801 841 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g01527 Accr-Chr12 22572748 22576589 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g01527 264 970 U-box Gene Family AT1G76390 27.141 5.98e-40 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g01527 - - gmx:100816935 1476.07