Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g01526 ATGATGGTAGGACTGGAACTCATACCAGTGGGTACAATTCTGGCTGTGCTTACCAATCAGATTATTAAAACAGCTAATGCAGCATCTGATGTTCTTGTCGAAAAAGAAACTTTCAAGGTTCTTTCAAAACACTTGTACGATATTGAACCGGTTCTAAAGGAATTACAGCTTCAAGAATTGAATGAGTCTCAAGCTGCAAGAATTGCTCTGGAGTCTCTTGAAGAAGATGTGAAAAGGGCAAATAAAGTGGTTGATAAGTACAGGAACCGTGGTCGTTTTTACTTGCTGGTTAATTGCAGGAGCATAGTTCATGAAGTTGAAGAAGTCACAAGAAGCATTGGAAAGTCCCTGGCTGTACTATCACTTGCAAATACCGAAGTTTTATCAGGAATTTCTGATCAGGTCGATAGATTACAAAATGAGATGCAAAGGGTGGAGTTTGAGGTGTCACATTCTCAGCTTCAAATAGTGGAGAGGTTGGACCAGGGCCTTAGGGAGCAGAAACTAGACCAGGCTTTTGCAAATGATATGCTTGAAGAAATCGCAAGGGCAGTTGGAGTGCCGGTAGATCCTTCAGAGATAAGCAAAGAGCTGGCCAGCATTAGGAAAGAAAAAGAAGAAGCTGCTGACAGGAAAGAAAGAGCCGAGGTCTTCTTCTTGGAGCAGGTCATTGAATTACTATCCCGAGCTGATGCTGCAAGAGATTATGAAGAAGTTAAGAAACAATACTATGAAAGACTTCAGGTGATAGAAAGATACAATTCAAGGGAGAAATATATAGAGCCGCTTAATTCTTTCATTTGTTGTATAACTGGGACCGTTATGGCAGATCCCGTAAGCCTTTGCACTGGTACTACTTGTGAGAGATATGCCATTGAGGCTTGGTTTGACACTGGTAAGAGGACTGACCCTGAAACTAAAGAAGCACTTGAAGATACTAAGTTGAGATCTAATGTTCCACTTAGACAATCCATAGAGGAATGGAGAGAACTTAATTACTGCCTTACAATCAGGTCTATCGGGGAAGACCTTTTATCAAATTCCAACTTATCCGTGCTAGAATCCTTGAGAAAAGTGCAGGATCTCATAAGAGACAATTCTATAAACAAGGATTGGATTTCCATAGGAGGGCTTACCGACATTATTATCTCTATCCTTGGGAAAACTGTTAATGGAGAAGTGAAGATCAACATTTTGAGTACTTTGAATGATGCAGTAGAAGGGCACATGAGAAACAAGGACAAAGTATCAGAATCTCAAGGATGGGATCACATTATTTGCAACTTGGGCAGTGACCCCAGAATTTCAAAAGCTGCAATTAAGTTGCTGTATGAGTTACTGCAAGATCGAACAGGTTGGAATGTGTCTCTCTGCAGAAAACTCTCTCAGCATGACAGTGCAATTTCTCTCCTCGTTACCCTTCGTAAGGGTCCAGAAGAGGAGTCAGCTGAGATTGTGGAAAAGATTTTGATGGAGCTTTTTCACATAGATGAGGTCAACATTTCTAGTGCTGCCAAGTTTGGCTGGTATAAACCGCTTGTTGATCATATGGTTCAAGGAGTAGAATCTTCAAGGATATCAATGGCAAAAACCATTGTGAATATGGAGTTGAGTGATTCAAATTTGAACCTCCTTGGTGAAGAAGGAGTTATATCTCCTTTGCTTGAAATGCTGTTTGGCAATATTGAATTAAAAGAAGCCTCGTTATCTGTGCTGGTTAAACTGTCAGATTCCCGTGCCAATAAAAGGATTATAGCTGCGTCAGGGGGAGTTCCTATCATTCTAGAACAAATTTTCTCTCCTCCCATGCGAACCCTCATTGCTATCAAATGCTCTGAAATCCTGGAGAAACTTTCTGCTGATGAAGATGGAATTGATTTCTTTGTTGACAGTGAAGGGAAACAACTTGAGTTAGATTCCATTATCATCAAATTACTTGCTCTTCAGCAGAGTCCCACCTTAGCCTACAATATCCGCAAGCCTTCTTTGCGTGCACTTCTTGGAATTTGCAAGTTTGAGACTGGTTTAGTCAAGAAGGCTGTCCTGGCTGCCAGGGGTGTATCTCTAATCCTCCCCCTCCTTGATGACTCCGATTCAGAAATCAGAGAGACCGCCATAAACCTTCTCTTTCTTTTATCCCAACATGAGCCAGAGGGAGTGGTTGAATACCTCTTCAGGCCAAGGAGGCTGGAGGCTTTGGTGGGATTTCTAGAGACTGATGACAATGATGTTCAGATGGCTGCTGCTGGTTTAATAGCAAACCTACCGAAATCCGAAAAAGAGCTCACTATGAAGCTGATTGAATTGGGTGGACTTGATGCAATCATATGCATTTTGAAAACTGGAACAATGGAAGCTAAAGAAAATGCTCTCAGTGCACTCTTCAGGTTTACAGATCCCACTAACATTGAGTCGCAGCGTGATTTGGTTAAGCGTGGGATATATCCTTTGCTCGTGAACTTTCTCGACACTGGTTCAATAACAGCAAAGGCTAGAGCAGCAGCCTTCATCGGAGATCTTTCTACAACCACCCCAATGCTCACGCTCACAGCCAAATCAACTGGCTGCTGGTGTTTTAGACCATCAAGAGCTCATTTATGCCCAGCACATGGTAGTGTATGCAGTGTGAGCAACACATTTTGTCTCTTGGAAGCACAAGCTTTGCCTGGTTTAGTAAATCTCTTATGTGGGGAGGTCGATGTAACTGCTTATGAAGCAATACAAACACTTTCAACATTGGTTTTGGAAGATTATCCTCAAAGGGGAGCTCATGTTTTGAACGAATCCAATGCTATAAAACCCCTTATGGATATTCTGACATGGGGTTCTGATTCTCTTATGGCTGAGGCTCTAGGACTCTTGGAGAAGGTCTTTGTATCAAAAGAAATGGTGGAATTGCACGGCGCAACAGCTAGATCGCGTTTGGTTGGTTTAACGGGGATGAATATATATGGAGATGGCCATCTCAGAAGAAAAGCTGCTAAGGTATTGTCATTGATCGAACGGTATTCAAGGTCGTCATCTGCTGCTGTTTCTGGAGTTCTGGAGTGA 3051 0.4212 MMVGLELIPVGTILAVLTNQIIKTANAASDVLVEKETFKVLSKHLYDIEPVLKELQLQELNESQAARIALESLEEDVKRANKVVDKYRNRGRFYLLVNCRSIVHEVEEVTRSIGKSLAVLSLANTEVLSGISDQVDRLQNEMQRVEFEVSHSQLQIVERLDQGLREQKLDQAFANDMLEEIARAVGVPVDPSEISKELASIRKEKEEAADRKERAEVFFLEQVIELLSRADAARDYEEVKKQYYERLQVIERYNSREKYIEPLNSFICCITGTVMADPVSLCTGTTCERYAIEAWFDTGKRTDPETKEALEDTKLRSNVPLRQSIEEWRELNYCLTIRSIGEDLLSNSNLSVLESLRKVQDLIRDNSINKDWISIGGLTDIIISILGKTVNGEVKINILSTLNDAVEGHMRNKDKVSESQGWDHIICNLGSDPRISKAAIKLLYELLQDRTGWNVSLCRKLSQHDSAISLLVTLRKGPEEESAEIVEKILMELFHIDEVNISSAAKFGWYKPLVDHMVQGVESSRISMAKTIVNMELSDSNLNLLGEEGVISPLLEMLFGNIELKEASLSVLVKLSDSRANKRIIAASGGVPIILEQIFSPPMRTLIAIKCSEILEKLSADEDGIDFFVDSEGKQLELDSIIIKLLALQQSPTLAYNIRKPSLRALLGICKFETGLVKKAVLAARGVSLILPLLDDSDSEIRETAINLLFLLSQHEPEGVVEYLFRPRRLEALVGFLETDDNDVQMAAAGLIANLPKSEKELTMKLIELGGLDAIICILKTGTMEAKENALSALFRFTDPTNIESQRDLVKRGIYPLLVNFLDTGSITAKARAAAFIGDLSTTTPMLTLTAKSTGCWCFRPSRAHLCPAHGSVCSVSNTFCLLEAQALPGLVNLLCGEVDVTAYEAIQTLSTLVLEDYPQRGAHVLNESNAIKPLMDILTWGSDSLMAEALGLLEKVFVSKEMVELHGATARSRLVGLTGMNIYGDGHLRRKAAKVLSLIERYSRSSSAAVSGVLE 1016
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g01526 1016 SMART arm_5 875 915 IPR000225 GO:0005515
Accr12g01526 1016 SMART arm_5 538 577 IPR000225 GO:0005515
Accr12g01526 1016 SMART arm_5 716 757 IPR000225 GO:0005515
Accr12g01526 1016 SMART arm_5 674 714 IPR000225 GO:0005515
Accr12g01526 1016 SMART arm_5 759 799 IPR000225 GO:0005515
Accr12g01526 1016 SMART arm_5 802 842 IPR000225 GO:0005515
Accr12g01526 1016 SMART arm_5 578 620 IPR000225 GO:0005515
Accr12g01526 1016 SMART arm_5 919 959 IPR000225 GO:0005515
Accr12g01526 1016 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 242 335 IPR013083 -
Accr12g01526 1016 Gene3D - 538 853 IPR011989 -
Accr12g01526 1016 Coils Coil 128 155 - -
Accr12g01526 1016 Gene3D - 860 1011 IPR011989 -
Accr12g01526 1016 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 12 1008 - -
Accr12g01526 1016 Coils Coil 63 90 - -
Accr12g01526 1016 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 549 590 IPR000225 GO:0005515
Accr12g01526 1016 CDD RING-Ubox_PUB 266 315 IPR045210 -
Accr12g01526 1016 SUPERFAMILY ARM repeat 337 721 IPR016024 -
Accr12g01526 1016 SUPERFAMILY ARM repeat 651 1001 IPR016024 -
Accr12g01526 1016 SMART Ubox_2 265 328 IPR003613 GO:0004842|GO:0016567
Accr12g01526 1016 Pfam U-box domain 265 330 IPR003613 GO:0004842|GO:0016567
Accr12g01526 1016 CDD MLKL_NTD 11 146 - -
Accr12g01526 1016 Gene3D - 8 124 IPR036537 GO:0007166
Accr12g01526 1016 Gene3D - 336 535 IPR011989 -
Accr12g01526 1016 ProSiteProfiles U-box domain profile. 261 335 IPR003613 GO:0004842|GO:0016567
Accr12g01526 1016 SUPERFAMILY RING/U-box 249 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g01526 Accr-Chr12 22572748 22576592 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g01526 265 971 U-box Gene Family AT1G76390 27.141 5.69e-40 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g01526 - - gmx:100816935 1476.07