Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g01516 ATGTTGGATCATTGTGGTTCTATCAGTTATGAAATCAGAATGAGCATGTCAAGTGAGATGAAAACGAAGAGCTTTAATCTTTGCCTTTGGTTTCGTTGCTTTTGTACTTTGCTATGTTTCTTCTTAGAACCTTCGAAGGCAAACAAGGCACAAATACCAATAGGTGTAGTTCTTGATCTTAAGACCTCAACTGGGAGTATGGCCATTCGCTGCATCCAAATGGCTTATCAAGACTTCTATAAACACTATTCTCATTACCAAACAAGACTTGATCTTCGAATCAGGGATTCTAAGAAAGATGTCGTCAGAGCAGCATCTACAGCTTTCGATTTGATGAAAAATGAAAAGGTGCGTGCAATTATGGGACCTTTATTTTCAGAACAAGCGAGGTTCGTAATACAACTAGGTCACAAACTTCGTGTTCCCATCGTCTCGTTTTCAGCCACAAGTCCATCTCTTTCTTCAACCCGAAGCAAATATTTCATAAGGACAACACAAGATGATTGCTCACAAGCACAGGCTATAGCCGCCATTATTGAAGCTTACGGATGGCGCGAAATCGTCCCAATCTACGAAGACACTGAGTATGGCAGGGGTTTGATCCCGTATCTCCTAGACGAATTGGAAAAAGTTAACACTCGATTGCCTGAAAGAAGTGCCATTGATCCGAATTCTGAGGAATCCGAAATCTTAGAGCAGCTGAAGAAACTAAATCAAAGTGGGAAAAGAATATTTCTTGTTCATATGACTAGTCTTGTTGGACCCAAATTCTTCTCAGTCGTGAACAAAGCTAGGATGATGAGGGAAGGGTACGGGTGGATAGTCACAGATGGGTTATCTAATTTCTTAGACCCTAATTTGGGTCCAAAAGTGATGGACTCTATGCAAGGTGTCTTGGGGATAAGGCCAAAGGTGGAAAAGTCTAGAAGGCTTACAAGTTTCAGAAATAGATGGAAAGCTTCGTCAATCAAACAAGGTATTGCGTCTTCTCCTTTAACCTTGTTTGGACTTTGGGCTTATGACACAGTTTGGGCTGTAGCCATGGCGGTAGAGTCTGTGTTTCCAAATTCTAAGGGTAATAATGACACACTCACAGATAGAATCTTGAGTACTAAATTTGAAGGCGTCTCTGGGTATTTCAATTTGAGTGAAGGGGAACTCAAACCCTTAGAGCTTGAAGTATTCAATGTGGTAGGACGCAAAGAGAGGGTCATTGGACATTGGAGCCCACAGAGAGGACTATTCCACGACAAAGAATATTCTTTGAGTAGGAGAGAGAAACTAATGCCACCAATATGGCCAGGGGACACGATATATCAACCAGTCAAACTGAGAATTGGGGTCCCAGTAAGAAAGGGTTTTGTTGAATTTGTGAAGGTGGAAACACGATCTTCAGAAAGTACTCCAGCTGTTTCTGGCTTTACTATTACCATGTTTCGAGAAGTGATCAATGCTTTACCTTTTCCTCTTCCTTACAAGTTTCTCGCATTCCCCAAGAAGAATGGAGAAAGTACCGAGTCCTATGATGAACTTGTTCTCCAAATAGAGAAAAAGGAGTATGATGCTGTGGTCGGAGATATAACAATTGTAGCTAGCCGTGCGGAACACGTTGAGTTTACGTTGCCGTTTTCGGAATCTGGAGTGTCAATGGTAGTTTCGATGAAGCAAGATGAGAGTCAAAACATGTGGATATTCTTAAAGCCTTTAAGTCCAGGTCTTTGGCTGACCACAGGTGCCGCATTTGTCTTCGCAAGTATCATTATATGGCTTCACGAACATCGTACAAACACAGAATTTCAAGTTTCCCCGCAGCAACAACTTGGCGTGATGTTCTGGTTTGCTTTCTCCACCTTAGTCTTTGCTCACAACGAAAGATTAGTGAACAATTGGTCGCGTTTTGTGCTGATATTGTGGGTATTTGTGGTGCTCATCATAACACAAAGTTACACTGCGAGTTTAGCTTCCATGTTAACTATGCAAAGATTACAGCCTAAGTTCATAGATGTGAATGAGATAAGAAATAATGATTACTGTGTGGGGTATATGAAGGGTTCCTTCGTGAAAATGCTTCTGAAAAACCAATTGGGATTTAGGGATGAGACAAAGTTGAAGCCATACGAGACGGCTGAAGAATATGATCGAGCTCTCGCTAGTGGTGAGGTTGCTGCAATCTTTGATGAAATACCCTACTTGAAGCTCTTCCTCTCAAAATACCGTTCCAAGTATGCTATGGTGGGGCCAACCTACAAAACTGGTGGATTTGGCTTTGCATTTCCACTAAAATCGCCGCTGGTATCTTATTTTTCGAGGGCAATCCTAAATGTGACTCAAGATGAAGAAAAATTTAAAAATATTTGGGGCAAGCACTTTTCCAGGGGATTAATATCTGAAGATGAAAGTGGATCATCAATTCCAAAGACTCCCAATATTCTTACTTTGTCTAGCTTTGGAGGGCTCTTCGTCATCACAGGGGTCTCTTCTGGGATTTCACTTCTCGTCTATTTGTTGAAATTTGTATACTCTCAGGCAAAAGAAAGGTTATCTCTTTGGTTGCTGCAATTAAAGGCTCGATTAATCGAGAGAATAGCTCTTTAA 2595 0.4127 MLDHCGSISYEIRMSMSSEMKTKSFNLCLWFRCFCTLLCFFLEPSKANKAQIPIGVVLDLKTSTGSMAIRCIQMAYQDFYKHYSHYQTRLDLRIRDSKKDVVRAASTAFDLMKNEKVRAIMGPLFSEQARFVIQLGHKLRVPIVSFSATSPSLSSTRSKYFIRTTQDDCSQAQAIAAIIEAYGWREIVPIYEDTEYGRGLIPYLLDELEKVNTRLPERSAIDPNSEESEILEQLKKLNQSGKRIFLVHMTSLVGPKFFSVVNKARMMREGYGWIVTDGLSNFLDPNLGPKVMDSMQGVLGIRPKVEKSRRLTSFRNRWKASSIKQGIASSPLTLFGLWAYDTVWAVAMAVESVFPNSKGNNDTLTDRILSTKFEGVSGYFNLSEGELKPLELEVFNVVGRKERVIGHWSPQRGLFHDKEYSLSRREKLMPPIWPGDTIYQPVKLRIGVPVRKGFVEFVKVETRSSESTPAVSGFTITMFREVINALPFPLPYKFLAFPKKNGESTESYDELVLQIEKKEYDAVVGDITIVASRAEHVEFTLPFSESGVSMVVSMKQDESQNMWIFLKPLSPGLWLTTGAAFVFASIIIWLHEHRTNTEFQVSPQQQLGVMFWFAFSTLVFAHNERLVNNWSRFVLILWVFVVLIITQSYTASLASMLTMQRLQPKFIDVNEIRNNDYCVGYMKGSFVKMLLKNQLGFRDETKLKPYETAEEYDRALASGEVAAIFDEIPYLKLFLSKYRSKYAMVGPTYKTGGFGFAFPLKSPLVSYFSRAILNVTQDEEKFKNIWGKHFSRGLISEDESGSSIPKTPNILTLSSFGGLFVITGVSSGISLLVYLLKFVYSQAKERLSLWLLQLKARLIERIAL 864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g01516 864 PIRSF IGluLR_plant 22 850 IPR017103 -
Accr12g01516 864 Gene3D - 60 390 - -
Accr12g01516 864 Gene3D - 563 703 - -
Accr12g01516 864 SUPERFAMILY Periplasmic binding protein-like II 437 780 - -
Accr12g01516 864 FunFam Glutamate receptor 443 562 - -
Accr12g01516 864 CDD GluR_Plant 443 780 - -
Accr12g01516 864 SMART GluR_14 443 789 IPR001320 GO:0015276|GO:0016020
Accr12g01516 864 Pfam Ligand-gated ion channel 781 825 IPR001320 GO:0015276|GO:0016020
Accr12g01516 864 Gene3D - 439 562 - -
Accr12g01516 864 FunFam Glutamate receptor 167 323 - -
Accr12g01516 864 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 54 844 IPR015683 -
Accr12g01516 864 Pfam Receptor family ligand binding region 72 398 IPR001828 -
Accr12g01516 864 FunFam Glutamate receptor 562 692 - -
Accr12g01516 864 Pfam Bacterial extracellular solute-binding proteins, family 3 471 780 IPR001638 -
Accr12g01516 864 CDD PBP1_GABAb_receptor_plant 54 415 IPR044440 -
Accr12g01516 864 Gene3D - 167 411 - -
Accr12g01516 864 SUPERFAMILY Periplasmic binding protein-like I 49 409 IPR028082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g01516 Accr-Chr12 22157714 22161656 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g01516 50 842 Ion Channels AT2G29120 43.289 0.0 662
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g01516 K05387 - qsa:O6P43_022275 891.723