Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g01515 ATGTTGGATCATTGTGGTTCTATCAGTTATGAAATCAGAATGAGCATGTCAAGTGAGATGAAAACGAAGAGCTTTAATCTTTGCCTTTGGTTTCGTTGCTTATGTTTCTTCTTAGAACCTTCGAAGGCAAACAAGGCACAAATACCAATAGGTGTAGTTCTTGATCTTAAGACCTCAACTGGGAGTATGGCCATTCGCTGCATCCAAATGGCTTATCAAGACTTCTATAAACACTATTCTCATTACCAAACAAGACTTGATCTTCGAATCAGGGATTCTGAGAAAGATGTCGTCAGAGCAGCATCTACAGCTTTCGATTTGATGAAAAATGAAAAGGTGCGTGCAATTATGGGACCTTTATTTTCAGAACAAGCGAGGTTCGTAATACAACTAGGTCACAAACTTCGTGTTCCCATCGTCTCGTTTTCAGCCACAAGTCCATCTCTTTCTTCAACCCGAAGCAAATATTTCATAAGGACAACACAAGATGATTGCTCACAAGCACAGGCTATAGCCGCCATTATTGAAGCTTACGGATGGCGCGAAATCGTCCCAATCTACGAAGACACTGAGTATGGCAGGGGTTTGATCCCGTATCTCCTAGACGAATTGGAAAAAGTTAACACTCGATTGCCTGAAAGAAGTGCCATTGATCCGAATTCTGAGGAATCCGAAATCTTAGAGCAGCTGAAGAAACTAAATCAAAGTGGGAAAAGAATATTTCTTGTTCATATGACTAGTCTTGTTGGACCCAAATTCTTCTCAGTCGTGAACAAAGCTAGGATGATGAGGGAAGGGTACGGGTGGATAGTCACAGATGGGTTATCTAATTTCTTAGACCCTAATTTGGGTCCAAAAGTGATGGACTCTATGCAAGGTGTCTTGGGGATAAGGCCAAAGGTGGAAAAGTCTAGAAGGCTTACAAGTTTCAGAAATAGATGGAAAGCTTCGTCAATCAAACAAGGTATTGCGTCTTCTCCTTTAACCTTGTTTGGACTTTGGGCTTATGACACAGTTTGGGCTGTAGCCATGGCGGTAGAGTCTGTGTTTCCAAATTCTAAGGGTAATAATGACACACTCACAGATAGAATCTTGAGTACTAAATTTGAAGGCGTCTCTGGGTATTTCAATTTGAGTGAAGGGGAACTCAAACCCTTAGAGCTTGAAGTATTCAATGTGGTAGGACGCAAAGAGAGGGTCATTGGACATTGGAGCCCACAGAGAGGACTATTCCACGACAAAGAATATTCTTTGAGTAGGAGAGAGAAACTAATGCCACCAATATGGCCAGGGGACACGATATATCAACCAGTCAAACTGAGAATTGGGGTCCCAGTAAGAAAGGGTTTTGTTGAATTTGTGAAGGTGGAAACACGATCTTCAGAAAGTACTCCAGCTGTTTCTGGCTTTACTATTACCATGTTTCGAGAAGTGATCAATGCTTTACCTTTTCCTCTTCCTTACAAGTTTCTCGCATTCCCCAAGAAGAATGGAGAAAGTACCGAGTCCTATGATGAACTTGTTCTCCAAATAGAGAAAAAGGAGTATGATGCTGTGGTCGGAGATATAACAATTGTAGCTAGCCGTGCGGAACACGTTGAGTTTACGTTGCCGTTTTCGGAATCTGGAGTGTCAATGGTAGTTTCGATGAAGCAAGATGAGAGTCAAAACATGTGGATATTCTTAAAGCCTTTAAGTCCAGGTCTTTGGCTGACCACAGGTGCCGCATTTGTCTTCGCAAGTATCATTATATGGCTTCACGAACATCGTACAAACACAGAATTTCAAGTTTCCCCGCAGCAACAACTTGGCGTGATGTTCTGGTTTGCTTTCTCCACCTTAGTCTTTGCTCACAACGAAAGATTAGTGAACAATTGGTCGCGTTTTGTGCTGATATTGTGGGTATTTGTGGTGCTCATCATAACACAAAGTTACACTGCGAGTTTAGCTTCCATGTTAACTATGCAAAGATTACAGCCTAAGTTCATAGATGTGAATGAGATAAGAAATAATGATTACTGTGTGGGGTATATGAAGGGTTCCTTCGTGAAAATGCTTCTGAAAAACCAATTGGGATTTAGGGATGAGACAAAGTTGAAGCCATACGAGACGGCTGAAGAATATGATCGAGCTCTCGCTAGTGGTGAGGTTGCTGCAATCTTTGATGAAATACCCTACTTGAAGCTCTTCCTCTCAAAATACCGTTCCAAGTATGCTATGGTGGGGCCAACCTACAAAACTGGTGGATTTGGCTTTGCATTTCCACTAAAATCGCCGCTGGTATCTTATTTTTCGAGGGCAATCCTAAATGTGACTCAAGATGAAGAAAAATTTAAAAATATTTGGGGCAAGCACTTTTCCAGGGGATTAATATCTGAAGATGAAAGTGGATCATCAATTCCAAAGACTCCCAATATTCTTACTTTGTCTAGCTTTGGAGGGCTCTTCGTCATCACAGGGGTCTCTTCTGGGATCTCACTTCTCGTCTATTTGTTGAAATTTGTATACTCTCAGGCAAAAGAAAGATTATCTCTTTGGTTGCTGCAATTAAAGGCTCGATTAATCGAGAGAATAGCTCTTTAA 2583 0.4135 MLDHCGSISYEIRMSMSSEMKTKSFNLCLWFRCLCFFLEPSKANKAQIPIGVVLDLKTSTGSMAIRCIQMAYQDFYKHYSHYQTRLDLRIRDSEKDVVRAASTAFDLMKNEKVRAIMGPLFSEQARFVIQLGHKLRVPIVSFSATSPSLSSTRSKYFIRTTQDDCSQAQAIAAIIEAYGWREIVPIYEDTEYGRGLIPYLLDELEKVNTRLPERSAIDPNSEESEILEQLKKLNQSGKRIFLVHMTSLVGPKFFSVVNKARMMREGYGWIVTDGLSNFLDPNLGPKVMDSMQGVLGIRPKVEKSRRLTSFRNRWKASSIKQGIASSPLTLFGLWAYDTVWAVAMAVESVFPNSKGNNDTLTDRILSTKFEGVSGYFNLSEGELKPLELEVFNVVGRKERVIGHWSPQRGLFHDKEYSLSRREKLMPPIWPGDTIYQPVKLRIGVPVRKGFVEFVKVETRSSESTPAVSGFTITMFREVINALPFPLPYKFLAFPKKNGESTESYDELVLQIEKKEYDAVVGDITIVASRAEHVEFTLPFSESGVSMVVSMKQDESQNMWIFLKPLSPGLWLTTGAAFVFASIIIWLHEHRTNTEFQVSPQQQLGVMFWFAFSTLVFAHNERLVNNWSRFVLILWVFVVLIITQSYTASLASMLTMQRLQPKFIDVNEIRNNDYCVGYMKGSFVKMLLKNQLGFRDETKLKPYETAEEYDRALASGEVAAIFDEIPYLKLFLSKYRSKYAMVGPTYKTGGFGFAFPLKSPLVSYFSRAILNVTQDEEKFKNIWGKHFSRGLISEDESGSSIPKTPNILTLSSFGGLFVITGVSSGISLLVYLLKFVYSQAKERLSLWLLQLKARLIERIAL 860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g01515 860 FunFam Glutamate receptor 558 688 - -
Accr12g01515 860 Gene3D - 163 407 - -
Accr12g01515 860 CDD GluR_Plant 439 776 - -
Accr12g01515 860 SUPERFAMILY Periplasmic binding protein-like II 433 776 - -
Accr12g01515 860 SUPERFAMILY Periplasmic binding protein-like I 45 405 IPR028082 -
Accr12g01515 860 Gene3D - 435 558 - -
Accr12g01515 860 SMART GluR_14 439 785 IPR001320 GO:0015276|GO:0016020
Accr12g01515 860 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 50 840 IPR015683 -
Accr12g01515 860 Pfam Bacterial extracellular solute-binding proteins, family 3 467 776 IPR001638 -
Accr12g01515 860 Pfam Receptor family ligand binding region 68 394 IPR001828 -
Accr12g01515 860 PIRSF IGluLR_plant 19 846 IPR017103 -
Accr12g01515 860 FunFam Glutamate receptor 439 558 - -
Accr12g01515 860 Gene3D - 559 699 - -
Accr12g01515 860 FunFam Glutamate receptor 163 319 - -
Accr12g01515 860 Pfam Ligand-gated ion channel 777 821 IPR001320 GO:0015276|GO:0016020
Accr12g01515 860 Gene3D - 56 386 - -
Accr12g01515 860 CDD PBP1_GABAb_receptor_plant 50 411 IPR044440 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g01515 Accr-Chr12 22089830 22093620 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g01515 46 838 Ion Channels AT2G29120 43.289 0.0 662
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g01515 K05387 - qsa:O6P43_022275 894.034