Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g01496 ATGCAACCGTCACAGGAGTCACTCATTGCAATGTACTTTCTCTTTGATGCAGCCGTCACAGGAGTCACTCATTCAATGTACTTTCTCTTTGATGCAACCGTCACAGGAGTCACTCATTGCAATATTGGTTTTAGAGGTAGATTTGAGAAACAATTAAAGAGGGGTGAGGAGGCGCTTAACAAAGCCGTGAACATGCGTAGAAATCATATAATTCTTTGCCGTCGTGTTGAGTCTTGCAAATCCAGGTATTCAACTCTTGATGAAATTGTGAGCCATCTGCGCTCAAATTACCCTGATTATCGTCGAGCTAAGCAGCAAATTTTGACTCGATCTGTTCAAGAAGCTTTGGAGTCATTTAAGTGTGGGAACAAGCAATCGAACAAAAAGCATGGTACTTCCATATTTAAGGATGACACCTCAGAGGATGACAAGGACAGTGAAGAGGGTTGGAGTGCATCTCGAAAGAAGTGCACTAAAATTGATGAGAGTGAAGAGAAGTTACAAAAACTGGAGAATTTACACCTCAGAAAGTTACAGAGGGATCAAGGTCATACATCAACCTCTTCTGCTTCAACTTCTAGTCCATCATTTTCATTGGAATCTAAAGAGAGTGAAGGTGAAGATGGGGCTGTGTCCACATCAGAGGATGCAATTTATGGGGAGAAAATGGAGCCAGCTGTTGACTTGATGAAGTCAATGCTGCGGGCTTCATATTCAGAACCAAAGAAAGTCACATCTACAATGGAAGAGAAAAATGTAGAATTAGAGGTGTCCAATAATAGAAAGGCAACTAAAATTGATGTTCTGAATGGGACTAAAGGTGGGATGAGATCGGATTTGGAATCCAAAAGGCAATTGAAGGGTTCGTTTTCAAATGGCAATGGTGATTTTGAGGTTAAGGGGAAGGGTGGCCTTAGATTCAAAGATTTGGGTGGAATGAAGGAGGTACTGGAGGAGTTGAAGATGGAAGTAATTGTGCCACTTTATCATCCACAGTTGCCAAGAAGGTTAGGTGTGAGGCCAATAGCTGGGATTTTGTTGCATGGACCACCAGGATGTGGGAAAACTACACTGGCTCGTGCTATAGCTAATGAGACTGGTTTTCCTTTCTATGAGATATCAGCTACAGAGGTAGTTTCTGGAGTTTCAGGAGCATCAGAAGAAATTATTAGAGAGCTTTTCTCTAAAGCATACAGGACTGCCCCATCAATTGTCTTTATTGATGAGATTGATGCAATTGCTTCAAAAAGAGAGAATTTACAGCGCGAGATGGAGAAACGAATTGTGACACAATTAATGACTTCAATGGATCAATCAAATAGGCTTCTTCAACCAGCTGATAGTTCAGGAAGTTCTGATACCCATCGTGGCTATATTCTTGTTATTGGAGCTACAAATAGGCCTGATGCTATCGACCCTGCCCTAAGGAGGCCTGGGCGGTTTGATCGTGAAATTGTTCTTGGTTGTCCTGATGAATGTGGCAGGGAGGAGATCCTATCTGTGCTTATTTCCAATCTAAAGCTTGAGGGCTCCTTTGATCTTAGGAAAATAGCCAGGTCTACACCAGGTTTTGTTGGAGCAGATTTGGTAGATCTGGTTAACAAGGCAGGTAACCTATCAATGAGAAGAATTATGGTTGAAAGGAAATTTGAGTTATCCCAAGATCTTTTACATGAGTGTTCTGAAGAATGGTGGAGGCAACCTTGGTCAGCTGAAGAGATGGATGAGCTTGTCATCAAAATGTCTGATTTTGAGGAAGCAGTTAAATTGGTGCAACCTTCATCAAGAAGAGAAGGATTTTCTTCCATTCCTAATGTAAAATGGGAAGATATCGGTGGGCTTGATCATCTAAGACAAGAGTTTGAGCGTTATATAGTTAGGCGCATAAAATATCCAGAGGCTTATGAGGAATTTGGGGTGAATCATGAGACAGGATTTTTGCTTTATGGACCACCAGGGTGTGGTAAAACGCTGATAGCCAAAGCTGTTGCCTATGAGGCAGGAGCTAATTTTATTCATATCAAGGGCCCTGAACTCTTAAATAAATACGTTGGAGAAAGTGAGCTAGCAGTAAGAACGTTGTTTAGTCGTGCAAGGACATGTTCACCCTGCATTATTTTCTTTGATGAGGTGGATGCTTTGACAACCAGAAGAGGTAAAGAAGGTGGATGGGTTGTTGAACGACTATTGAACCAGTTACTTATTGAATTAGATGGTGCCGAGCAAAGGCAAGGTGTATTTGTTATTGGTGCTACAAACAGACCTGAGGTGATGGACCGCGCTCTCCTTCGGCCCGGTCGGCTTGGTAAACTCCTTTATGTTCCTCTTCCTAGCGCAGATGAGCGAGGCTTGATCTTGAAAGCACTTGCAAGAAAGAAGCCAATTGATGACACTGTGGATTTGTGTGCCATTGGAAGAATGGAAGCTTGTGAAAACCTCAGCGGTGCTGATCTTGCTGCATTGATGAATGAAGCAGCAGAGGCTGCAGCTGAAGAGAAATGGACATCAACAGAGAGCACTTGCAATGCATCGACTATCAAGTTCAGGCATTTTGATATGGCATTGAGAAAAATCTCCCCATCCGTGACTGACATGCAAAAACATTACTATCAAAAATTGTCAGAGACTTTTAAAGCTGCCTGA 2643 0.4226 MQPSQESLIAMYFLFDAAVTGVTHSMYFLFDATVTGVTHCNIGFRGRFEKQLKRGEEALNKAVNMRRNHIILCRRVESCKSRYSTLDEIVSHLRSNYPDYRRAKQQILTRSVQEALESFKCGNKQSNKKHGTSIFKDDTSEDDKDSEEGWSASRKKCTKIDESEEKLQKLENLHLRKLQRDQGHTSTSSASTSSPSFSLESKESEGEDGAVSTSEDAIYGEKMEPAVDLMKSMLRASYSEPKKVTSTMEEKNVELEVSNNRKATKIDVLNGTKGGMRSDLESKRQLKGSFSNGNGDFEVKGKGGLRFKDLGGMKEVLEELKMEVIVPLYHPQLPRRLGVRPIAGILLHGPPGCGKTTLARAIANETGFPFYEISATEVVSGVSGASEEIIRELFSKAYRTAPSIVFIDEIDAIASKRENLQREMEKRIVTQLMTSMDQSNRLLQPADSSGSSDTHRGYILVIGATNRPDAIDPALRRPGRFDREIVLGCPDECGREEILSVLISNLKLEGSFDLRKIARSTPGFVGADLVDLVNKAGNLSMRRIMVERKFELSQDLLHECSEEWWRQPWSAEEMDELVIKMSDFEEAVKLVQPSSRREGFSSIPNVKWEDIGGLDHLRQEFERYIVRRIKYPEAYEEFGVNHETGFLLYGPPGCGKTLIAKAVAYEAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCIIFFDEVDALTTRRGKEGGWVVERLLNQLLIELDGAEQRQGVFVIGATNRPEVMDRALLRPGRLGKLLYVPLPSADERGLILKALARKKPIDDTVDLCAIGRMEACENLSGADLAALMNEAAEAAAEEKWTSTESTCNASTIKFRHFDMALRKISPSVTDMQKHYYQKLSETFKAA 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g01496 880 MobiDBLite consensus disorder prediction 178 219 - -
Accr12g01496 880 SMART AAA_5 341 491 IPR003593 GO:0016887
Accr12g01496 880 SMART AAA_5 642 778 IPR003593 GO:0016887
Accr12g01496 880 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 306 596 IPR027417 -
Accr12g01496 880 FunFam Ribosome biogenesis ATPase RIX7 296 488 - -
Accr12g01496 880 PANTHER AAA-FAMILY ATPASE 153 878 - -
Accr12g01496 880 ProSitePatterns AAA-protein family signature. 459 477 IPR003960 GO:0005524|GO:0016887
Accr12g01496 880 MobiDBLite consensus disorder prediction 123 158 - -
Accr12g01496 880 FunFam ATPase, AAA family protein 604 782 - -
Accr12g01496 880 Gene3D - 298 488 IPR027417 -
Accr12g01496 880 Pfam AAA+ lid domain 512 545 IPR041569 -
Accr12g01496 880 Pfam ATPase family associated with various cellular activities (AAA) 345 487 IPR003959 GO:0005524|GO:0016887
Accr12g01496 880 Pfam ATPase family associated with various cellular activities (AAA) 647 775 IPR003959 GO:0005524|GO:0016887
Accr12g01496 880 Gene3D - 490 598 - -
Accr12g01496 880 CDD RecA-like_NVL_r2-like 614 774 - -
Accr12g01496 880 Gene3D - 777 856 - -
Accr12g01496 880 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 604 876 IPR027417 -
Accr12g01496 880 ProSitePatterns AAA-protein family signature. 746 764 IPR003960 GO:0005524|GO:0016887
Accr12g01496 880 MobiDBLite consensus disorder prediction 130 158 - -
Accr12g01496 880 FunFam Cell division control protein 48 homolog C 490 598 - -
Accr12g01496 880 Coils Coil 153 180 - -
Accr12g01496 880 MobiDBLite consensus disorder prediction 182 200 - -
Accr12g01496 880 Gene3D - 604 870 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g01496 Accr-Chr12 21107592 21120464 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g01496 304 878 Calmodulin-binding Proteins AT3G56690 36.751 2.45e-119 385
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g01496 K14571 - gmx:100809594 1059.28