Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g01488 ATGAATCGAGTAGTGAAGGAGGAGATTATTATGGAGGCGACGGCGACGGCGGCTGCTGCTCCACAGCCAATGGAGGGGCTTCACGAAGCTGGTCCTCCGCCGTTTCTGACAAAAACATACGACATCGTCGACGACGTGTCCACCAACCACATAGTTTCGTGGAGCCGAGGTAACAATAGCTTCGTTGTCTGGGATCCACAGTCTTTCTCCATGAGCCTCCTTCCCAGATTCTTCAAACACAGCAATTTCTCCAGCTTTGTCAGACAGCTTAATACCTATGGATTCAGAAAGGTTGATCCAGATAGGTGGGAATTTGCCAATGAAGGGTTTCTGAGAGGACAAAAGCATCTTCTCAAGAACATAAGGAGAAAGAAAACAACTCAACAACAACAACAACAACATCATAAACAGCATGACCATCAAGCTCTAGATTCATGCGTGGAACTAGGCCAGTTCGGGCTGGACGGAGAGGTGAACCGGCTCCGGCGAGACAAGCAGGTGCTCATGCTGGAGCTGGTGAAACTCAGGCAACAACAACATAATACAAAAACATACCTTCAACAAATGGAAGGTAGGCTCAAGAGAACCGAACAAAAGCAGCAACAAATGATGAATTTCTTAGCAAGAGCCATGCAGAACCCTAATTTTGTTCAGCAATTAGTTCAGCAGAAAGAATGGAAGAAGGAACTTGAAGAAGCAATCTCAAAGAAAAGAAGAACCATAGATCAAGGGCCCAGTAGTCATAATAATAATAATGTTGATGAGTTATTAGTAGGTCAATTAGATTGCTCAGAATTGGTTGAAATACTTGAACCTAATAATAATATTGCTGCTGCTGCTGGGGACTTGGATTTGATTGGCAAGTTAGAGGAAGAAGATGAACATCATAATGAGGTAATCCAAAGTATTAATAGAGAGAAAGAGATCACTAACGACGATGAAGTGTTTTGGCAAGACTTGTTGAACGAGGATGTTGAAGAAGTTGTACGAGGCTTCGAGGATGATGATGGGGAAGATGTTGACGAGTTGGCTGAAGAACTTGGTTATTTAGCTTCTAATAGTCCTTATCACCATCAGTAA 1080 0.4324 MNRVVKEEIIMEATATAAAAPQPMEGLHEAGPPPFLTKTYDIVDDVSTNHIVSWSRGNNSFVVWDPQSFSMSLLPRFFKHSNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKNIRRKKTTQQQQQQHHKQHDHQALDSCVELGQFGLDGEVNRLRRDKQVLMLELVKLRQQQHNTKTYLQQMEGRLKRTEQKQQQMMNFLARAMQNPNFVQQLVQQKEWKKELEEAISKKRRTIDQGPSSHNNNNVDELLVGQLDCSELVEILEPNNNIAAAAGDLDLIGKLEEEDEHHNEVIQSINREKEITNDDEVFWQDLLNEDVEEVVRGFEDDDGEDVDELAEELGYLASNSPYHHQ 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g01488 359 FunFam Heat shock transcription factor 1 28 125 - -
Accr12g01488 359 Coils Coil 158 178 - -
Accr12g01488 359 Gene3D - 27 126 IPR036388 -
Accr12g01488 359 Pfam HSF-type DNA-binding 35 124 IPR000232 GO:0003700|GO:0006355|GO:0043565
Accr12g01488 359 SMART hsfneu3 31 124 IPR000232 GO:0003700|GO:0006355|GO:0043565
Accr12g01488 359 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 21 253 IPR027725 -
Accr12g01488 359 ProSitePatterns HSF-type DNA-binding domain signature. 74 98 IPR000232 GO:0003700|GO:0006355|GO:0043565
Accr12g01488 359 Coils Coil 223 243 - -
Accr12g01488 359 SUPERFAMILY "Winged helix" DNA-binding domain 31 124 IPR036390 -
Accr12g01488 359 PRINTS Heat shock factor (HSF) domain signature 35 58 IPR000232 GO:0003700|GO:0006355|GO:0043565
Accr12g01488 359 PRINTS Heat shock factor (HSF) domain signature 86 98 IPR000232 GO:0003700|GO:0006355|GO:0043565
Accr12g01488 359 PRINTS Heat shock factor (HSF) domain signature 73 85 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g01488 Accr-Chr12 20883475 20886374 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g01488 16 354 HSF AT3G22830 55.827 1.33e-124 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Accr12g01488 HSF_DNA-bind 9.6e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g01488 K09419 - gmx:100809515 402.134