Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g01487 ATGAATCGAGTAGTGAAGGAGGAGATTATTATGGAGGCCACCGCAACGGCGACCACCAATATGGCGGCGATGGCCGCGGCTGCTGCTCCACAGCCAATGCAGGGGCTCCACGAAGGTGGTCCTCCGCCGTTTCTGACAAAAACATACGACATCGTCGACGACGTGTCCACCAACCACATAGTTTCGTGGAGCGGAGGTTACAATAGCTTCGTTGTCTGGGATCCACAGTCTTTCTCCATGAGCCTCCTTCCCAGATTATTCAAACACAGCAATTTCTCCAGCTTCGTCAGACAGCTAAATACCTATGGATTCAGAAAGGTTGATCCAGATAGGTGGGAATTTGCCAATGAAGGGTTTCTGAGAGGACAAAAGCATCTTCTCAAGAACATAAGGAGAAAGAAAACAAGGCAACAACAACAACATCATCATAAACACCATGACCATCAAGCTCTAGATTCATGCGTGGAAGTAGGCCAGTTCGGGCTGGACGGAGAGGTGAACCGGCTCCGGCGAGACAAGCAAGTGCTCATGCTGGAGCTGGTAAAACTCAGGCAACAGCAGCAGAATACAAAAACCTACCTTCAACAAATGAAAGGTAGGCTCAAAAGAACCGAACAAAAGCAGCAACAAATGATGAATTTCTTAGCAAGATCCACGCAGAACCCTAACTTTGTTCAGCAATTAGTTCAGCAGAAAGAATGGAAGAAGGAACTTGAAGAAGAAATCTCAAAGAAAAGAAGAACCATAGATCAAGGGCCTAGTAGTCATAATAATGATAATAATGTTGATGAGTTATTAGTAGGTCAATTAGATTGCTCAGATCTGGTTGAAATACTTGAACCTAATAATAATATTGCTGCTGCTGCTGCTGGGGATTTGGATTTGATTGGCAAGGTAGAGGAAGAAGATGAACAACATAATGAGGTAATCCAAAGTATTAATAGAGAGAAAGAGATTATTAACGACGAAGATTTCTGGCAAGACTTGTTGAATAACGAGGATATTGTAGAAGTTGTACGAGGCTTCCAGGACAGGGGCGGAATTGGGAAGGCTAGGGTTGGCCCCCTAAAATTGCATAATTGA 1083 0.4432 MNRVVKEEIIMEATATATTNMAAMAAAAAPQPMQGLHEGGPPPFLTKTYDIVDDVSTNHIVSWSGGYNSFVVWDPQSFSMSLLPRLFKHSNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKNIRRKKTRQQQQHHHKHHDHQALDSCVEVGQFGLDGEVNRLRRDKQVLMLELVKLRQQQQNTKTYLQQMKGRLKRTEQKQQQMMNFLARSTQNPNFVQQLVQQKEWKKELEEEISKKRRTIDQGPSSHNNDNNVDELLVGQLDCSDLVEILEPNNNIAAAAAGDLDLIGKVEEEDEQHNEVIQSINREKEIINDEDFWQDLLNNEDIVEVVRGFQDRGGIGKARVGPLKLHN 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g01487 360 Coils Coil 166 186 - -
Accr12g01487 360 MobiDBLite consensus disorder prediction 131 150 - -
Accr12g01487 360 FunFam Heat shock transcription factor 1 37 134 - -
Accr12g01487 360 SMART hsfneu3 40 133 IPR000232 GO:0003700|GO:0006355|GO:0043565
Accr12g01487 360 SUPERFAMILY "Winged helix" DNA-binding domain 40 133 IPR036390 -
Accr12g01487 360 ProSitePatterns HSF-type DNA-binding domain signature. 83 107 IPR000232 GO:0003700|GO:0006355|GO:0043565
Accr12g01487 360 Gene3D - 37 135 IPR036388 -
Accr12g01487 360 PRINTS Heat shock factor (HSF) domain signature 82 94 IPR000232 GO:0003700|GO:0006355|GO:0043565
Accr12g01487 360 PRINTS Heat shock factor (HSF) domain signature 44 67 IPR000232 GO:0003700|GO:0006355|GO:0043565
Accr12g01487 360 PRINTS Heat shock factor (HSF) domain signature 95 107 IPR000232 GO:0003700|GO:0006355|GO:0043565
Accr12g01487 360 Pfam HSF-type DNA-binding 44 133 IPR000232 GO:0003700|GO:0006355|GO:0043565
Accr12g01487 360 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 30 260 IPR027725 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g01487 Accr-Chr12 20826448 20829230 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g01487 28 331 HSF AT3G22830 55.224 9.27e-115 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Accr12g01487 HSF_DNA-bind 9.5e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g01487 K09419 - gmx:100809515 362.073