Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g01463 ATGGATTCTACTTGTTCTTCTTCAACGAAACCAACCAGGAAACCAGGAAAAGGTAGAAGAAAGATCGAGATCAAGAAGGTTGAGGAATCCAGCAAGCGTCTCGTCACCTTCTCCAAACGCAAGTTAGGGCTTTTCCGAAAAGCTGCTGAGCTTTCGCTGCTGTGTGAGTCTGAGATCGCCGCGGTCGTCTTTTCTCAGCAGGGTAAGGTGTTCTCCTCCGGCTACCCTAACCCTGACTCTGTTATCCAACGCTACCTCTCCTCCGACACCTCCTCTTCCTCCTCCTCGGACCCTGCTACCGGAGAATCATCTGGGGTGTCGTCACTGAGGCGGGAATATGAGGAGGCGATGAAGGTTTTGGACGGCGAGAAGAAGTCTCTGAACGCCGTGGCTGAGGATACTTCTGGGTCGGGTTCTGAAGACGGTTCATGGTGGAACCGATCAGTTAGTGAGATGGGTTTGGAGGAAGTCCAAGAGTTCAAGGAACGGCTTCAACAGTTAAGGCACAATCTGGTTGCCGCAGCAGAGGAGAAGAAGAAGGAGAAGATGACTACGGCGGCGGCGGAGAAGATGACTGCTTCGGTGGTGACTTTGCCGCCACCTACGGAGGAGGAGGAAAGTTTGTTCCAGTCTATGTTGAACGATGATTTGGGTATGGCTAAGAATGACCAAACGTGGGATTGGGGTTGTGATTCATGGATTGACACTACAAGCTGGAATGAATCTTCTTGTCTGGTTTGGAATAGTGATGCTGGCCACTCTGACATTAACGACAAGGGTTTCTGA 786 0.5089 MDSTCSSSTKPTRKPGKGRRKIEIKKVEESSKRLVTFSKRKLGLFRKAAELSLLCESEIAAVVFSQQGKVFSSGYPNPDSVIQRYLSSDTSSSSSSDPATGESSGVSSLRREYEEAMKVLDGEKKSLNAVAEDTSGSGSEDGSWWNRSVSEMGLEEVQEFKERLQQLRHNLVAAAEEKKKEKMTTAAAEKMTASVVTLPPPTEEEESLFQSMLNDDLGMAKNDQTWDWGCDSWIDTTSWNESSCLVWNSDAGHSDINDKGF 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g01463 261 Coils Coil 157 184 - -
Accr12g01463 261 MobiDBLite consensus disorder prediction 130 144 - -
Accr12g01463 261 PRINTS MADS domain signature 54 75 IPR002100 GO:0003677|GO:0046983
Accr12g01463 261 PRINTS MADS domain signature 39 54 IPR002100 GO:0003677|GO:0046983
Accr12g01463 261 PRINTS MADS domain signature 19 39 IPR002100 GO:0003677|GO:0046983
Accr12g01463 261 Gene3D - 29 104 IPR036879 GO:0003677|GO:0046983
Accr12g01463 261 MobiDBLite consensus disorder prediction 108 128 - -
Accr12g01463 261 ProSiteProfiles MADS-box domain profile. 17 77 IPR002100 GO:0003677|GO:0046983
Accr12g01463 261 PANTHER MADS BOX PROTEIN 19 171 - -
Accr12g01463 261 SMART madsneu2 17 76 IPR002100 GO:0003677|GO:0046983
Accr12g01463 261 Coils Coil 110 130 - -
Accr12g01463 261 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 26 72 IPR002100 GO:0003677|GO:0046983
Accr12g01463 261 MobiDBLite consensus disorder prediction 1 25 - -
Accr12g01463 261 MobiDBLite consensus disorder prediction 82 107 - -
Accr12g01463 261 SUPERFAMILY SRF-like 18 88 IPR036879 GO:0003677|GO:0046983
Accr12g01463 261 MobiDBLite consensus disorder prediction 82 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g01463 Accr-Chr12 19981621 19982406 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g01463 18 172 Type I MADS-box Gene Family AT2G24840 37.821 1.77e-27 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Accr12g01463 SRF-TF 1.8e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g01463 - - pcin:129319416 233.802