Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g01462 ATGGATTCTACTTGTTCTTCTTCAACGAAACCAACCAGGAAACCAGGAAAAGGTAGAAGAAAGATCGAGATCAAGAAGGTTGAGGAATCCAGCAAGCGTCTCGTCACCTTCTCCAAACGCAAGTTAGGACTTTTCCGAAAAGCTGCTGAGCTTTCGCTGCTGTGTGAGTCTGAGATCGCCGCAGTCGTCTTTTCTCAGCAGGGTAAGATGTTCTCCTCCGGCTACCCTAACCCTGACTCTGTTATCCAACGCTACCTCTCCTCCGACACCTTCTCTTCCTCCTCCTCGGACCCTGCTGCCGGAGAATCATCTGGAGTGTCGTCACTGAGGCGGGAATACGAGGAGGCGATGAAGGTTTTGGACGGCGAGAAGAAGTCTCTGAACGCCGTGGCTGAGGCTACTTCTGGGTCGGGTTCTGAAGACGGGTCATGGTGGAACCGATCAGTTAGTGAGATGGGTTTGGAGGAAGTCCAAGAGTTCAAGGAACGGCTTCAACAGTTAAGGCACAATCTGGTTGCCGCAGCAGAGGAGAAGATGACTACTGCGGCGGCGGAGAAGATGACTGCTTCGGTGGTGACTTTGCCGCCACCTACGGAGGAGGAGGAAAGTTTGTTCCAGTCCATGTTGAACGATGATTTGGGTATGGCTAAGAATGACCAAACGTGGGATTGGGGTTGTGATTCATGGATTGACACTACAAGCTGGAATGAATCTTCTTGTCTGGTTTGGAATAGTGATGCTGGCCACTCTGATATTAACGACAAGGGTTTCTGA 774 0.5078 MDSTCSSSTKPTRKPGKGRRKIEIKKVEESSKRLVTFSKRKLGLFRKAAELSLLCESEIAAVVFSQQGKMFSSGYPNPDSVIQRYLSSDTFSSSSSDPAAGESSGVSSLRREYEEAMKVLDGEKKSLNAVAEATSGSGSEDGSWWNRSVSEMGLEEVQEFKERLQQLRHNLVAAAEEKMTTAAAEKMTASVVTLPPPTEEEESLFQSMLNDDLGMAKNDQTWDWGCDSWIDTTSWNESSCLVWNSDAGHSDINDKGF 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g01462 257 PRINTS MADS domain signature 54 75 IPR002100 GO:0003677|GO:0046983
Accr12g01462 257 PRINTS MADS domain signature 19 39 IPR002100 GO:0003677|GO:0046983
Accr12g01462 257 PRINTS MADS domain signature 39 54 IPR002100 GO:0003677|GO:0046983
Accr12g01462 257 Coils Coil 110 130 - -
Accr12g01462 257 SMART madsneu2 17 76 IPR002100 GO:0003677|GO:0046983
Accr12g01462 257 Coils Coil 157 177 - -
Accr12g01462 257 MobiDBLite consensus disorder prediction 1 25 - -
Accr12g01462 257 Gene3D - 29 92 IPR036879 GO:0003677|GO:0046983
Accr12g01462 257 ProSiteProfiles MADS-box domain profile. 17 77 IPR002100 GO:0003677|GO:0046983
Accr12g01462 257 PANTHER MADS BOX PROTEIN 19 171 - -
Accr12g01462 257 SUPERFAMILY SRF-like 18 89 IPR036879 GO:0003677|GO:0046983
Accr12g01462 257 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 26 72 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g01462 Accr-Chr12 19972101 19972874 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g01462 18 172 Type I MADS-box Gene Family AT2G24840 37.821 5.96e-28 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Accr12g01462 SRF-TF 1.7e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g01462 - - pcin:129319416 238.81