Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g01459 ATGGCCGTCGGAAAAAATAAGAGAATTTCGAAGGGTAAAAAGGGAGGAAAGAAGAAGGCAGTTGATCCGTTTGCCAAGAAGGATTGGTATGATATCAAAGCTCCATCTATTTTCCAAGTTAAGAATGTGGGCAAAACCCTCGTCACTCGTACTCAGGGTACCAAGATTGCCTCAGAAGGACTGAAGCACAGAGTGTTTGAGGTCTCTTTGGCTGATCTCCAAGGTGATGAGGATCACGCATTCAGGAAGATTAGGTTGAGAGCTGAAGATGTTCAAGGCAAGAATGTTCTCACAAACTTCTGGGGAATGGACTTCACAACTGATAAGCTGAGGTCATTGGTTCGCAAATGGCAAACTTTGATCGAAGCTCATGTGGACGTCAAGACCACTGATAACTACACATTGAGGATGTTCTGCATTGGGTTCACAAAGAGGCGTTCGAACCAGGTTAAGAGAACCTGTTATGCCCAGTCCAGCCAGATCAGACAGATCCGCAGGAAGATGCGTGAGATTATGACTAACCAGGCTACATCCTGTGATTTGAAAGAGTTGGTCCGTAAGTTCATACCTGAGATGATTGGAAAGGAGATTGAGAAGGCAACATCTAGCATCTATCCTTTGCAGAATGTGTTCATTCGCAAGGTCAAGATCCTGAAGGCTCCTAAGTTTGATCTTGGAAAACTTATGGAGGTTCATGGAGATTGCCCTGAAGATGTTGGTGTTAAGGTAGATAGACCAGCAGATGTAGCTGAGGCTCCCACTGAAATTGTTGGAGCTTAA 780 0.4462 MAVGKNKRISKGKKGGKKKAVDPFAKKDWYDIKAPSIFQVKNVGKTLVTRTQGTKIASEGLKHRVFEVSLADLQGDEDHAFRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDNYTLRMFCIGFTKRRSNQVKRTCYAQSSQIRQIRRKMREIMTNQATSCDLKELVRKFIPEMIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDCPEDVGVKVDRPADVAEAPTEIVGA 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g01459 259 PANTHER 40S RIBOSOMAL PROTEIN S3A 1 249 - -
Accr12g01459 259 SMART Ribosomal_S3Ae_2 15 221 IPR001593 GO:0003735|GO:0005840|GO:0006412
Accr12g01459 259 ProSitePatterns Ribosomal protein S3Ae signature. 61 73 IPR018281 GO:0003735|GO:0005840|GO:0006412
Accr12g01459 259 Hamap 40S ribosomal protein S1 [RPS3A]. 1 259 IPR027500 GO:0003735|GO:0005840|GO:0006412
Accr12g01459 259 Pfam Ribosomal S3Ae family 16 221 IPR001593 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g01459 Accr-Chr12 19891152 19892909 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g01459 1 259 Cytoplasmic Ribosomal Protein Gene Family AT3G04840 85.496 1.04e-160 444
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g01459 K02984 - gmx:100813273 474.167