Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g01458 ATGGACACACCAGAGAGGAACCAGATCGGCACTCCCATCTCCAAATTTGAGGATTCACCCGTCTTCAACTTTATCAATAGTCTTTCTCCTATAAAGCCTGTTAAGTCTGTTCATAGTATTCAGACTATCAATTCACTCAGTTTTTCATCTCCTCCATCTGTGTTTACATCACCCCATGTCAGCTGTCACAGGGAATCTAGATTTCTAAGGAGCCATAACGTTTTAGATGCATCAAAGCATCAGGTTTTGTCTGAAGATGGGAAAAAATTTTGTTCAAGTGAAGAAGCTCTTGCAGATTCAGCTCATGCATATCATAACTCAAGTGAGCCACAAGGAAATGCTGATCAAAGGATTCCCCTAGAAGATTCAACAACTGATCCATCTAACGAGCAGCCGGAGTTTCCAATTGAGCTTCCACAAACCTTAAAATATGATTGTGGTAGCCCAGCTTGTGATCCTCCCACTGGTGGTGATGAGACAAATTCACTTATGGATTTGTCTGGTAAAGCAGCATCAGATGTTACCTATGTTGATGAAGCCTGTGAACAAAATCCACCTGAGACTGAAGTGCCACTTCCAGGAATGTGTCAAATTGAGCCAAGAATTGGAGGCTCAGAATGTGACTGGGACGGTTTACTTGCAGATGCTACAGATCTATTAATCTTCAACTCTCCAAATGAAAGAGAAACTTTAAAGGGTCTAATGCAGAAATCATTTGACCCCAGTGGATCGTTTAGCAATTTTATGTCTCAGTTGCCACAAACTACCTTAAGTCATGGTGAGAAAATGCCAATTGTTGATCCAGCTGCTTCTGGTTCGGAACATGAAATCGAAGATCATCCTTCTCAACAAGGAGAAGTCATTGAGAATGATCAGGCACAGGACAATCTAGCTAACACTGCTGGGATGGGTTGCTATCCTAATAATACTTTGAATAATCAGCTTGTTTCTATAACACGCCATGGCATACGGAGGCGTTGTCTAGACTTTGAGATGGTTGGGGGAAGAAGGAAGAACACCAATGATGGTTCAAATAACAGTAGTTCCAGCGCATTACAATCTGATGAGAGGAATGTTGCTTTTGATAAGCAGCTGCTTCCTGCAAAACGCAATGGTAATTCACAGAGGTGCACTTTGCCTGGAATTGGCTTACACTTGAATGCTCTTGGGGGCATAAAAGATTACAAAAGCTTAAACATCGAAAATATATCTTCTGGAAGACAACTTAGTCTGCCAAGCCCTGCCTTGCAACAGTCTTCAAGCCAAGAACATAGTCTAGCATTGGTGCCTGTACCAGCAGAAGGAGATTCAGGTCTGCCAGACAATGGGTTTCAGCCTGCTGAAGATTGTTCCCAGCCCTCAGGATATGTGGTTGATGAGGATTTCAACCACAATAGCCCCAAAAAGAAAAGGCGTAAGTTGGAGTCAGCTGGAGATGGTGAATCATGTAAGCGTTGTAATTGCAAGAAATCAAAGTGTTTGAAGCTTTATTGTGAGTGCTTTGCCGCTGGTGTCTACTGCATAGAACCTTGCTCTTGCCAGGATTGCTTCAACAAGCCTATTCATGAGGATACTGTTCTTGCAACTCGCAAGCAGATTGAGTCTCGTAATCCTCTAGCCTTTGCTCCTAAAGTCATTCGAAGCTCAGATTCTGTACCTGAAATTGGGGATGATCCCAACAAAACTCCAGCTTCTGCAAGGCACAAAAGAGGATGTAACTGCAAGAAATCAAACTGCTTGAAGAAATATTGTGAATGCTATCAGGGTGGCGTTGGTTGCTCCATTAGCTGTAGATGTGAAGGATGCAAGAATGGTTATGGTAGAAAGGATGGTTCTGCTCCAATTGGAATAGAAGCTGAACCAGAAGAAGAAACAGAATCATCTGAGAAGGCTGTGGCTGAAAAATCTTTACAAAAATCTGAGATCCAGAACAACGAAGAACATCCAGAGTCGACTCTTGCCACGACACCATTACGTATTTGCAGACCGTTGCTTCCCCTATCATTTTCATCAAAGGGAAAACCACCAAGATCTTCTTTCATTACTACTATACCAGCTTCTGGATTGTATGCCAGCCAAAAACTTGGGAAACCCAGCATCCTTCGGTCTCAACCCAAGTTTGAAAAACCATTTAAACCAGTTTCCAACGACGAAATGCCGGAGGTTCTCCGGGGCGACGGATCTCCCAGTGTCAAGACATCATCTCCAAATGGCAAGAGGATCTCATCTCCAAACTGTGAATTTGGATCATCTCCAACCCGCAGAAGTGGCAGGAAGTTGATATTACAATCCATCCCATCATTTCCTTCCCTCACTGCTCCTCACCTTTAG 2331 0.4311 MDTPERNQIGTPISKFEDSPVFNFINSLSPIKPVKSVHSIQTINSLSFSSPPSVFTSPHVSCHRESRFLRSHNVLDASKHQVLSEDGKKFCSSEEALADSAHAYHNSSEPQGNADQRIPLEDSTTDPSNEQPEFPIELPQTLKYDCGSPACDPPTGGDETNSLMDLSGKAASDVTYVDEACEQNPPETEVPLPGMCQIEPRIGGSECDWDGLLADATDLLIFNSPNERETLKGLMQKSFDPSGSFSNFMSQLPQTTLSHGEKMPIVDPAASGSEHEIEDHPSQQGEVIENDQAQDNLANTAGMGCYPNNTLNNQLVSITRHGIRRRCLDFEMVGGRRKNTNDGSNNSSSSALQSDERNVAFDKQLLPAKRNGNSQRCTLPGIGLHLNALGGIKDYKSLNIENISSGRQLSLPSPALQQSSSQEHSLALVPVPAEGDSGLPDNGFQPAEDCSQPSGYVVDEDFNHNSPKKKRRKLESAGDGESCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCQDCFNKPIHEDTVLATRKQIESRNPLAFAPKVIRSSDSVPEIGDDPNKTPASARHKRGCNCKKSNCLKKYCECYQGGVGCSISCRCEGCKNGYGRKDGSAPIGIEAEPEEETESSEKAVAEKSLQKSEIQNNEEHPESTLATTPLRICRPLLPLSFSSKGKPPRSSFITTIPASGLYASQKLGKPSILRSQPKFEKPFKPVSNDEMPEVLRGDGSPSVKTSSPNGKRISSPNCEFGSSPTRRSGRKLILQSIPSFPSLTAPHL 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g01458 776 ProSiteProfiles CRC domain profile. 482 607 IPR005172 -
Accr12g01458 776 SMART CXC_2 481 522 IPR033467 -
Accr12g01458 776 SMART CXC_2 567 608 IPR033467 -
Accr12g01458 776 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 484 519 IPR005172 -
Accr12g01458 776 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 570 604 IPR005172 -
Accr12g01458 776 MobiDBLite consensus disorder prediction 335 357 - -
Accr12g01458 776 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 1 772 IPR044522 GO:0003700
Accr12g01458 776 MobiDBLite consensus disorder prediction 338 357 - -
Accr12g01458 776 MobiDBLite consensus disorder prediction 701 776 - -
Accr12g01458 776 MobiDBLite consensus disorder prediction 635 655 - -
Accr12g01458 776 MobiDBLite consensus disorder prediction 104 134 - -
Accr12g01458 776 MobiDBLite consensus disorder prediction 728 770 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g01458 Accr-Chr12 19853960 19859129 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g01458 16 775 CPP Transcription Factor Family AT4G14770 43.790 4.51e-161 480
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Accr12g01458 TCR 2.6e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g01458 - - gmx:100804447 956.051