LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Accr12g01457	ATGGATTTGGAAGCAGGGGCTCTGGATTCCAAGATGAAGGGTGTTGGGAACATTAGCAGTAACGATAAAATTTTCAGAGCTGATAAGATTGATCTCAAACGTTTGGATGTGCAGCTTGAAAAGCACTTGAGCAGGGTGTGGTCCAGGAACGTTGAGTCCAAAAGGCCTAAAGAAGAATGGGAGATTGATTTGGCCAAATTGAATCTCGAATACGTTGTAGCTCATGGGACCTATGGTACTGTTTATAGAGGCACCTATGATAACCAAGATGTTGCAGTGAAAGTTTTGGACTGGGGTGAGGATGGTGTCGCCACAGCTGCTGAAACTGCTGCTTTACGTGCATCATTTCAGCAGGAGGTTGCTGTTTGGCACAAACTTGACCATCCAAATGTTACAAAATTTGTTGGAGCTTCAATGGGAACCTCGAATCTAAAAATTCCCACAAAGAACTCTGATGGCCAAGAGTCCCTTCCTTCTAGGGCTTGTTGTGTTGTTGTTGAGTATATCCCTTGTGGGACACTAAAACAATTATTGTTCAAACAGAGGTATAAGAAACTTGCTTTCAAGGTTGTGATCAAGCTGGCTTTGGATCTCGCAAAGGGTCTCAGCTATCTACATACAAAGAAGATTGTACATCGTGATGTCAAAGCAGAGAATATGTTACTGGATCATGGCGGAAATTTGAAAATAGCTGATTTTGGAGTGGCCCGAGTTGAAGCACAAAATCCAAGCGACATGACTGGCGAAACTGGAACCCTTGGATATATGGCACCAGAGGTTTTGGATGGTAAGCCTTACAACAGAAGATGTGATGTGTACAGCTTTGGCATTTGCTTGTGGGAAATATATTGTTGTGATATCCCTTATCCAGATCTTAGCTTTGCTGAGGTGTCATTGGCAGTTGTGCGTCAGAATTTGCGACCAGAAATCCCACGGTGTTGTCCGACATCTTTGGCCAATATCATGAAGAAATGTTGGGATGGGAAGCCAGAGAAGCGTCCAGAAATGGGCGAGGTGGTGAGTTTTCTGGAAGCCATAGATACAAGCAAAGGAGGAGGAATGATACCAGAAGATGCCACACCCAAGTGCTTCTGTTTTGCCCCATCTCGTGGTCCCTAA	1119	0.4424	MDLEAGALDSKMKGVGNISSNDKIFRADKIDLKRLDVQLEKHLSRVWSRNVESKRPKEEWEIDLAKLNLEYVVAHGTYGTVYRGTYDNQDVAVKVLDWGEDGVATAAETAALRASFQQEVAVWHKLDHPNVTKFVGASMGTSNLKIPTKNSDGQESLPSRACCVVVEYIPCGTLKQLLFKQRYKKLAFKVVIKLALDLAKGLSYLHTKKIVHRDVKAENMLLDHGGNLKIADFGVARVEAQNPSDMTGETGTLGYMAPEVLDGKPYNRRCDVYSFGICLWEIYCCDIPYPDLSFAEVSLAVVRQNLRPEIPRCCPTSLANIMKKCWDGKPEKRPEMGEVVSFLEAIDTSKGGGMIPEDATPKCFCFAPSRGP	372

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Accr12g01457	372	ProSiteProfiles	Protein kinase domain profile.	67	346	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Accr12g01457	372	Gene3D	Transferase(Phosphotransferase) domain 1	169	354	-	-
	Accr12g01457	372	Gene3D	Phosphorylase Kinase; domain 1	56	150	-	-
	Accr12g01457	372	SUPERFAMILY	Protein kinase-like (PK-like)	48	343	IPR011009	-
	Accr12g01457	372	SMART	serkin_6	67	343	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Accr12g01457	372	PANTHER	SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED	58	346	-	-
	Accr12g01457	372	Pfam	Protein tyrosine and serine/threonine kinase	68	343	IPR001245	GO:0004672\|GO:0006468
	Accr12g01457	372	CDD	STKc_MAP3K-like	73	343	-	-
	Accr12g01457	372	PRINTS	Tyrosine kinase catalytic domain signature	270	292	IPR001245	GO:0004672\|GO:0006468
	Accr12g01457	372	PRINTS	Tyrosine kinase catalytic domain signature	314	336	IPR001245	GO:0004672\|GO:0006468
	Accr12g01457	372	PRINTS	Tyrosine kinase catalytic domain signature	166	179	IPR001245	GO:0004672\|GO:0006468
	Accr12g01457	372	PRINTS	Tyrosine kinase catalytic domain signature	204	222	IPR001245	GO:0004672\|GO:0006468
	Accr12g01457	372	PIRSF	ILK	32	352	-	-
	Accr12g01457	372	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	210	222	IPR008271	GO:0004672\|GO:0006468
	Accr12g01457	372	FunFam	Kinase suppressor of Ras 1	56	151	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Accr12g01457	Accr-Chr12	19817326	19820728	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Accr12g01457	16	372	MAP Kinase Kinase Kinase	AT3G22750	78.771	0.0	602

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TKL-Pl-4	Accr12g01457		PK_Tyr_Ser-Thr	2.7e-59	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Accr12g01457	-		-	gmx:100803917	622.854