Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g01426 ATGGAACCGGGCATGAGATCAGCTTGTCCTTCGGGGGTTGTGGTGAAGAGCAGGAACTCTTCGGGCTGTTTAATTGTTAGAAAGAAAGATGGATTGGGTGGTGAATATCGTTCTTCAAGCAACTCTCGCAAGTTGTATGAGTCGCAGGTTCGGAAAAGGCCTAGTATGGCTCTAAGTGATTCAGAATCAAGTGATGATGACTCGCTGATGCCTCCAAGTAGAAGACTTAATTCTGAGACTCTTCGAGCCTGTAATGTATTCACTGCTTCAGAGCGAGGTATAGTGGAAGGCAATGAAATTAGTAGAAAAGGGGATAGAATGATGCAAATCAGGCGTAATGAGGATCCTAAGATTGAGAATAATGGTTTCGAGCAGAGAAAAAGAAAGAAGATTAAAATGGAAGTCTTTGATTTTGATGAACATGATGGTATGGATGCGGAAAATATGAAAAGGAGGTTCTTTTATGACAATGACAGAGTAGGTCTTGGGGGACGAAGATTTATGGGACAAATGCATGCCACAAGAAGTGGCTTTGAGAGTAAATTTGACAAAGGGTCTAGCAGACACACTCTTGATGATAGAAACAACTCCTATTATGGCAGGGATTCTGTTGACCCCGGCAGGTTCAATGTGAATAGGGATGATGCTTGCCTAAGTCTACCATTGCCGAAAGATAAGTTTGTCAGGGTTCAGGGGAAAAATGGTGTTTTAAAGGTTCTGGTTAATAGGAATAAGGTGGGTGGCCCATCAGAGTACTATAATCACCTCAAACCTATAGAAAACAGACAGAATTTGCAGACTGAGGCCCCCGCAAAGCGGAATATTCCAGTCCATTCTTCATCATACTCAGAAACTAAACTTGTTGAGAAGCCAGGTTTACTTGTTAGGCCGGGGAAAAAACTGATGGCATCAAGAAAATCTTTGTTGATTAAGGACAGCAAGGGACGTGATTGGGACTCTGAGGACTGTGACACACCATTGAATCAAGGATTACAAAATACTAAACCCTTGAAGTCTGTGAAGAGGGTAGGTTCTGAGGATGAAAAGACTCCACGTGAGAAGCTTCCAACTACAATAAAAGATGGAAAAGAAGGAAAAGTAAGGCGTGGGAGTGCTACAGAAAAACAGAAACTGCGAGAAAAAATAAGGGAGATGCTGCTGAGTTCTGGTTGGACTATAGATTATCGGCCTCGAAGGAACAGAGATTATCTAGATGCAGTTTACATCAATCCAGGGGGTACCGCCTACTGGTCAATAATTAAAGCATATGAGGCTCTTAAAAAGCAGTTGAATGGTGATGATAATGAGGCCAAGCCCATAGTTGATGGTTCTTCCTTTGCCCGGATTTCAGATGAACTGTTGAGTCAATTAACAAGGAAAACTCGGAAGAAGATGGAAAAAGAATTGAAGAAGAAGCAGAGAGATGGTAGTGAGAGTGAAAGTGAAATGGAACCTGACCTTAAAAGGTCTGCCGATCTCAGGCATGATATGAATAGCATGGATAGTGATAGCAATGAAGAGAAATTAAGCTCTTTTATAAAGAAGGGTAGTAATTCAATGAAAAATAAGCTGATTGAAAATGTTGCCAGCATTAGCTTTAAATCCCAGAAATCAACCCATCACATACTAGATGGAACTGAAAATTCATTGTCTGGATGTGATTCTCATCATCCACGTGGGAGGAAAAGTATAAAACATAGAAGATGTACTTTGTTAATCCGTAGTTCCAATAAGGGAGTGAATTCGGAATCTGATGGCTTTGTTCCATATACAGGCAAAAGAACAGTGCTTTCCTGGTTGATTGACTCTGGGACAGTTCAGTTGAGCCAAAAGGTTCAGTACCGCAAACGAAAACGAGTAATGCTGGAGGGGTGGATCACAAGAGACGGCATTCATTGTGGATGTTGCAGTAAAATTCTTACAGTTTCCAAGTTTGAGATTCATGCAGGTAGTAAATTGCGCCAGCCATTTCAAAACATATATTTGGATTCAGGAGTATCACTTCTACAGTGCCAAATAGATGCATGGTTGAGACAGGAGCACTCAGAGAAAATTAATTTTCATTCTGTTGATGTTGATGGCAATGATCCAAATGATGACACTTGCGGTATATGTGGAGATGGAGGGGATTTAATATGTTGTGATGGTTGTCCATCAACATTTCATCAGAGCTGCTTGAATATACAGATGCTTCCTCCTGGTGAGTGGCATTGTCCAAAATGCACCTGCAAATTTTGTGGAATGGCCAGTAGAACCGTTAAAAAAGGAGATGATGATACTGTATATGCTCTTGTCACTTGCAAGTTGTGTGAGAAAAAATACCATGAATCTTGCACTAAGGATATGGATGCTATTTCTGTCAACTCGGATATGCCAGGCTTTCATTTTTGTGGAAAAGAGTGCAAAGAGCTTTTTGAGCACTTGAAGAAGTACCTAGGTACTAAGCATGAGCTAGAAGCAGGATTTTCATGGTCTGTTATTCGTAGAGAAGATGAAGACTCAGAGGCAGCTGATAGAGGAATTTTTCAAAGGGTGGAATGCAACTCTAAGCTAGCCGTTGCACTGACTGTGATGGATGAATGCTTTTTACCCATTATTGACCAGAGGAGTGGCATCAATTTAATTCATAATGTTCTATATAACAGTGGATCAAACTTCAGTAGGTTGAATTATAGTGGCTTTTACACAGCTATTCTAGAGAGGGGCGATGAAATAATTTCTGCAGCGTCTATCAGGTTCCATGGGACTAAGTTGGTGGAGATGCCATTTATTGGAACTCGCCATATGTACAGGCGCCAGGGGATGTGCCGCAAGCTTTTTTCTGCCATTGAATCGGCCCTCTGCTTTATGAACGTTGAGAAAATGGTTATTCCAGCAATTGCTGAACTCACACAAACATGGACAGCAATCTTTGGCTTTACACCTCTTGAGGAATCACTCAGGCAAGAAATGAGGTCTTTGAATATGCTGGTCTTCCCTGGTATTGATATGCTGCAGAAGTTGCTGGTGGAGCAAGGGGACTTTGAAGAAAACACAACTTCCACAGGTGCTGATAAAATGGACCGTGGAGACAAAGTTTCTACTAAGCCAAAATTGGCTAATTCCTCATCTCATCTAGATATTAATGGAAGCGATGGTGCTGGTTCAGATCCTCTTAATGAGATAAAAGATGATTGTAGTGATGGTTCTTTAGATCAAATCAATCAAGTTTTGTCTGACAAGATTGTATGTTCCAAATCGTGTTCCGAGGATAGGCTAGCTGACTCAGCTTCAGATAGATGTTCTTCTCCCTCTAGTGCCAGTCATGATGTGTTGGAGATGGAAAATAAAGTGGTGGCTTCTCCATCATTTAAAGATAATTTGCATATGTCTACTGATTGTCAGGGCGATTCTCTGAATGACACTCAATATATACATCCATCTGATGCTCCAGATGGCCCGGAAAATTGTACTTTGGTTCGGAGAGCTGCTACTTCTGATCCTAATTCTACAAGAAACTTGGTTGAACCTGTTTCTGACTGGGAAAGTCGTTTCTCTACTGCTATAAATGGTGATTCATCTGAGTTTGAGATGAACCTGATGTTGGATTCTCAAATGATGGATAATACTGCTACCACTTTTAGGGAGGCTGACATGAATGATTTTCAAGAGGAACAGGAAGCTGTTCCTTTGGGGAGTTTGTACGAAGAGAACGATGTTACCAACAATAACATTGAAAATACAGATGTGTCTGATTCTGAACTCAACCATGAAGAAAAGAATGAAACTGAGTATGATGGGGAAAGAAACAAATATATTGACACTGAAGTTGCTTCAAAAGGAATGCAATTTTATGGAAGTGGCATGAATGAATCCAGTGATAGTTCTGAGACTGATTCGGAGTAA 3885 0.4088 MEPGMRSACPSGVVVKSRNSSGCLIVRKKDGLGGEYRSSSNSRKLYESQVRKRPSMALSDSESSDDDSLMPPSRRLNSETLRACNVFTASERGIVEGNEISRKGDRMMQIRRNEDPKIENNGFEQRKRKKIKMEVFDFDEHDGMDAENMKRRFFYDNDRVGLGGRRFMGQMHATRSGFESKFDKGSSRHTLDDRNNSYYGRDSVDPGRFNVNRDDACLSLPLPKDKFVRVQGKNGVLKVLVNRNKVGGPSEYYNHLKPIENRQNLQTEAPAKRNIPVHSSSYSETKLVEKPGLLVRPGKKLMASRKSLLIKDSKGRDWDSEDCDTPLNQGLQNTKPLKSVKRVGSEDEKTPREKLPTTIKDGKEGKVRRGSATEKQKLREKIREMLLSSGWTIDYRPRRNRDYLDAVYINPGGTAYWSIIKAYEALKKQLNGDDNEAKPIVDGSSFARISDELLSQLTRKTRKKMEKELKKKQRDGSESESEMEPDLKRSADLRHDMNSMDSDSNEEKLSSFIKKGSNSMKNKLIENVASISFKSQKSTHHILDGTENSLSGCDSHHPRGRKSIKHRRCTLLIRSSNKGVNSESDGFVPYTGKRTVLSWLIDSGTVQLSQKVQYRKRKRVMLEGWITRDGIHCGCCSKILTVSKFEIHAGSKLRQPFQNIYLDSGVSLLQCQIDAWLRQEHSEKINFHSVDVDGNDPNDDTCGICGDGGDLICCDGCPSTFHQSCLNIQMLPPGEWHCPKCTCKFCGMASRTVKKGDDDTVYALVTCKLCEKKYHESCTKDMDAISVNSDMPGFHFCGKECKELFEHLKKYLGTKHELEAGFSWSVIRREDEDSEAADRGIFQRVECNSKLAVALTVMDECFLPIIDQRSGINLIHNVLYNSGSNFSRLNYSGFYTAILERGDEIISAASIRFHGTKLVEMPFIGTRHMYRRQGMCRKLFSAIESALCFMNVEKMVIPAIAELTQTWTAIFGFTPLEESLRQEMRSLNMLVFPGIDMLQKLLVEQGDFEENTTSTGADKMDRGDKVSTKPKLANSSSHLDINGSDGAGSDPLNEIKDDCSDGSLDQINQVLSDKIVCSKSCSEDRLADSASDRCSSPSSASHDVLEMENKVVASPSFKDNLHMSTDCQGDSLNDTQYIHPSDAPDGPENCTLVRRAATSDPNSTRNLVEPVSDWESRFSTAINGDSSEFEMNLMLDSQMMDNTATTFREADMNDFQEEQEAVPLGSLYEENDVTNNNIENTDVSDSELNHEEKNETEYDGERNKYIDTEVASKGMQFYGSGMNESSDSSETDSE 1294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g01426 1294 ProSitePatterns Zinc finger PHD-type signature. 702 741 IPR019786 -
Accr12g01426 1294 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 690 791 IPR013083 -
Accr12g01426 1294 ProSiteProfiles Zinc finger PHD-type profile. 699 744 IPR019787 -
Accr12g01426 1294 MobiDBLite consensus disorder prediction 1014 1028 - -
Accr12g01426 1294 CDD PHD2_CHD_II 702 741 - -
Accr12g01426 1294 MobiDBLite consensus disorder prediction 315 358 - -
Accr12g01426 1294 MobiDBLite consensus disorder prediction 54 75 - -
Accr12g01426 1294 MobiDBLite consensus disorder prediction 460 506 - -
Accr12g01426 1294 MobiDBLite consensus disorder prediction 1029 1043 - -
Accr12g01426 1294 MobiDBLite consensus disorder prediction 34 75 - -
Accr12g01426 1294 MobiDBLite consensus disorder prediction 325 339 - -
Accr12g01426 1294 Pfam PHD-finger 702 744 IPR019787 -
Accr12g01426 1294 MobiDBLite consensus disorder prediction 177 199 - -
Accr12g01426 1294 MobiDBLite consensus disorder prediction 340 358 - -
Accr12g01426 1294 PANTHER PHD FINGER PROTEIN 12 355 1137 IPR042163 GO:0003714|GO:0045892
Accr12g01426 1294 SMART PHD_3 743 802 IPR001965 -
Accr12g01426 1294 SMART PHD_3 701 742 IPR001965 -
Accr12g01426 1294 MobiDBLite consensus disorder prediction 1011 1054 - -
Accr12g01426 1294 Pfam Tify domain binding domain 624 674 IPR032308 -
Accr12g01426 1294 MobiDBLite consensus disorder prediction 1227 1262 - -
Accr12g01426 1294 MobiDBLite consensus disorder prediction 1229 1243 - -
Accr12g01426 1294 SUPERFAMILY FYVE/PHD zinc finger 685 744 IPR011011 -
Accr12g01426 1294 Coils Coil 455 482 - -
Accr12g01426 1294 MobiDBLite consensus disorder prediction 1244 1262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g01426 Accr-Chr12 19262448 19268742 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g01426 4 1029 PHD Transcription Factor Family AT4G14920 48.393 0.0 875
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Accr12g01426 TDBD 1.1e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g01426 - - gmx:102666194 1449.88