Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g01410 ATGACGATGATGGCGAATCATTTCCAGAACGGTATTGAAACAGCGAAGCTCGTTTGGTCTCGAATTCCGAACTCGGAGTCGGAGGAACCCCAGGACTCGGAAGACACCGTTGGATTTTTGAAGAAGAGTGATGGAAGCGGCGTCGAGAGCCTTGACTATGAAGTCATAGAGAATTATGCTTATCGGGAAGAACAGGCGCTAAGAGGGAAGCTGTATGTGGGCTATTTGTTGGTGGTGAAATGGTTCTTTGCTTTGCTCATAGGCATTGGTACTGGAATTGCTGCTGTTTTCATCAATATATCTGTTGAAAACTTCGCTGGTTGGAAGTTTTCACTGACATTTCATATAATTCAGAAATCCTATATTGCGGGCTTTCTTGTATATGTCCTGATCAACTTGGTTTTGGTCTTATCCTCTGTATATATTATCACACAATTTGCTCCAGCAGCAGCTGGATCTGGTATTCCTGAAATTAAGGGTTACTTAAATGGAGTTGATATTTATGGCATCCTTCTTCTCAGAACCTTGATTGGAAAGATATTTGGAAGCATTGGTTCAGTCGGAGGTGGCCTTGCTTTAGGTAAAGAAGGCCCTCTTGTGCATACTGGTGCTTGTATTGCTTCTTTGCTTGGACAAGGTGGATCTACCAAGTATAAACTAAATTCTAGGTGGTTTCAAGTATTCAAAAGTGATCGGGATCAGCGAGATCTAGTAACCTGCGGGTGTGCAGCTGGAGTAGCTGCCGCATTTAGAGCTCCAGTTGGTGGTGTTTTGTTTGCATTGGAAGAGGTAACATCATGGTGGAGAAGTCAATTGATGTGGCGTGTCTTCTTCACTTCTGCTGTTGTGGCTGTCGTAGTGCGTACTGCAATGGGGTGGTGTAAGAGTGGAAAGTGTGGACATTTTGGCTCGGGTGGATTCGTCATATGGGATATATCAGGTGGTCAAGAGGATTATTCCTTTGCTGAGTTACTGCCAATGGCTGTTATTGGGGTTATTGGAGGACTGCTAGGAGCCTTGTTTAATCAGCTTACTCTTTATGTGTCTTCCTGGCGTCGAAATCATCTGCACAAGAAAGGGGGCCGAGTCAAGATCATCGAAGCATGCCTTGTATCCCTGTTAACTTCGGTTATTTCATTTGGTTTGCCACTCCTAAGAAAATGTAGTCCGTGCCCTGAATCTGATCCTCATTCTGATTCTACTATTGAATGTCCTCGACCACCTGGAATGTATGGGAATTATGTAAATTTCTTCTGTAGCAAAGACAAGGAATACAATGATCTTGCCACAATCTTCTTCAATACACAGGATGACGCCATAAGGAATTTGTTTAGTGCGAAAACAATACATGAGTACAGTCCCCAAAGTTTATTGACCTTTTTGGTAATGTTTTATACTCTAGCAGTTTTAACATTTGGTACAGCAGTTCCAGCTGGCCAATTTGTTCCTGGAATCATGATAGGATCAACATATGGACGTCTTGTTGGCATGTTTGTTGTAAAATATTATGGAAAGCTCAACATTGAAGAGGGAACGTATGCTTTATTAGGAGCTGCATCTTTTCTTGGAGGTTCAATGCGAATGACAGTGTCTCTCTGTGTCATTATGGTTGAAATAACAAATAACTTACAGCTGTTGCCTCTTATTATGCTTGTTCTCCTTATATCCAAGGCTGTCGGTGATGCTTTTAATGAGGGCCTCTATGAAGAGCAGGCACGACTTAAGGGAATTCCATTGCTGGAATCAAGGCCTAAATATGAGATGCGGAATATGACAGCAAAGGAGGCCTGTGGTAGCAGAAGGGTTGTTTCTCTCCCTCGTGTTGTCAAGGTTGCAGATGTAGCTTCCATTCTGCGGAGCAATGATCACAATGGTTTTCCTGTCATTGATCACACAAGAAATGGAGAATCACTTGTTATTGGATTAGTGCTTCGGAGTCATCTCTTGGTAATTCTACAGTCAAAGGTTGATTTCCAGCATATTCCTATACCTGGTGATACCAGAGGCGTGACCAACCCGATAAGGCACCGTTCTGATGAATTCACTAAGCCTGTTTCTAGTAAAGGAATCTGTATAGATGATATACATCTAAGTTCAGATGATTTAGAAATGTACATAGATCTTGCCCCATTTTTGAACCCCTCACCATATATTGTACCCGAAGATATGTCTTTGACAAAGGTCTACAATCTTTTCCGCCAACTAGGTTTGAGGCATTTATTTGTTGTTCCACGACCATCTCGGGTTCTTGGTTTGATAACCAGAAAAGATCTGTTGATTGAGGACACCAAAAATGAAAATGCAATACCGCTCCAATTAACTAGCACAATGTCTTTATGA 2340 0.4209 MTMMANHFQNGIETAKLVWSRIPNSESEEPQDSEDTVGFLKKSDGSGVESLDYEVIENYAYREEQALRGKLYVGYLLVVKWFFALLIGIGTGIAAVFINISVENFAGWKFSLTFHIIQKSYIAGFLVYVLINLVLVLSSVYIITQFAPAAAGSGIPEIKGYLNGVDIYGILLLRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYKLNSRWFQVFKSDRDQRDLVTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAVVAVVVRTAMGWCKSGKCGHFGSGGFVIWDISGGQEDYSFAELLPMAVIGVIGGLLGALFNQLTLYVSSWRRNHLHKKGGRVKIIEACLVSLLTSVISFGLPLLRKCSPCPESDPHSDSTIECPRPPGMYGNYVNFFCSKDKEYNDLATIFFNTQDDAIRNLFSAKTIHEYSPQSLLTFLVMFYTLAVLTFGTAVPAGQFVPGIMIGSTYGRLVGMFVVKYYGKLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLQLLPLIMLVLLISKAVGDAFNEGLYEEQARLKGIPLLESRPKYEMRNMTAKEACGSRRVVSLPRVVKVADVASILRSNDHNGFPVIDHTRNGESLVIGLVLRSHLLVILQSKVDFQHIPIPGDTRGVTNPIRHRSDEFTKPVSSKGICIDDIHLSSDDLEMYIDLAPFLNPSPYIVPEDMSLTKVYNLFRQLGLRHLFVVPRPSRVLGLITRKDLLIEDTKNENAIPLQLTSTMSL 779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g01410 779 FunFam Chloride channel protein 704 778 - -
Accr12g01410 779 Pfam Voltage gated chloride channel 136 560 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Accr12g01410 779 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 27 764 - -
Accr12g01410 779 Gene3D Clc chloride channel 74 581 - -
Accr12g01410 779 Gene3D - 585 766 IPR046342 -
Accr12g01410 779 CDD CBS_pair_voltage-gated_CLC_euk_bac 599 759 - -
Accr12g01410 779 PRINTS Plant CLC chloride channel signature 264 272 IPR002251 GO:0005247|GO:0006821|GO:0016020
Accr12g01410 779 PRINTS Plant CLC chloride channel signature 54 62 IPR002251 GO:0005247|GO:0006821|GO:0016020
Accr12g01410 779 PRINTS Plant CLC chloride channel signature 296 303 IPR002251 GO:0005247|GO:0006821|GO:0016020
Accr12g01410 779 PRINTS Plant CLC chloride channel signature 428 444 IPR002251 GO:0005247|GO:0006821|GO:0016020
Accr12g01410 779 PRINTS Plant CLC chloride channel signature 278 288 IPR002251 GO:0005247|GO:0006821|GO:0016020
Accr12g01410 779 ProSiteProfiles CBS domain profile. 712 769 IPR000644 -
Accr12g01410 779 SMART cbs_1 715 763 IPR000644 -
Accr12g01410 779 SMART cbs_1 601 653 IPR000644 -
Accr12g01410 779 SUPERFAMILY Clc chloride channel 58 582 IPR014743 -
Accr12g01410 779 PRINTS Chloride channel signature 148 165 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Accr12g01410 779 PRINTS Chloride channel signature 567 581 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Accr12g01410 779 PRINTS Chloride channel signature 511 527 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Accr12g01410 779 PRINTS Chloride channel signature 179 198 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Accr12g01410 779 PRINTS Chloride channel signature 529 548 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Accr12g01410 779 PRINTS Chloride channel signature 476 496 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Accr12g01410 779 PRINTS Chloride channel signature 243 262 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Accr12g01410 779 FunFam Chloride channel ClC3 72 389 - -
Accr12g01410 779 Pfam CBS domain 599 652 IPR000644 -
Accr12g01410 779 Pfam CBS domain 713 759 IPR000644 -
Accr12g01410 779 SUPERFAMILY CBS-domain pair 585 759 IPR046342 -
Accr12g01410 779 CDD ClC_6_like 49 580 - -
Accr12g01410 779 ProSiteProfiles CBS domain profile. 598 658 IPR000644 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g01410 Accr-Chr12 18933402 18942187 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g01410 3 779 Ion Channels AT5G26240 82.754 0.0 1240
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g01410 K05016 - gmx:100811908 1323.92