Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g01403 ATGGAGCTTCAGAGACGCCAAGATCAAGGCTTCTCTGAGAGGAAAGGACAGAATCGGAAGCCGGAGGAGGAATTGGAAGAGAAGTCTGAGATTTCGGCTCCACCGCCCACCGGCCGCGTCCCTGATGCGCTGCTCCCCAATATGAAGGCTTACGTTGGCATCCTCGAATCCACTTTCTCATGGACGGAATCCGATCGAGCTGCAGCTAAGCGCGCCGCTCACTTCCTTGCTGAGCTTGCCAAGAATGAAGAAGTAGTGAACTTGATTGTTGAAGGAGGTGCAATTCCGGCTTTGGTTAAGCATCTTCAAGCGCCTCCTTCTTGTGGAGACGATGCTGCTGAGAAGCCATTTGAGCACGAGGTTGAGAAAGAGAGTGCTTTTGCTTTGGGACTTCTTGCCGTCAAGCCAGAACATCAACAGCTCATTGTTGACAATGGTGCCTTGAAACATCTTGTTGATCTGTTGAAGAGGCATAATAGAAGCCCTACTTCTCGTGCTGTGAATAGTGTCATTCGCCGGGCTGCAGATGCGGTCACTAATCTTGCTCATGAAAACAGTAACATTAAAACCTGTGTCAGGATGGAAGGTGGGATTCCACCACTTGTTGCGTTGCTTGGATTCACTGATATAAAGGTTCAAAGAGCAGCTGCTGGTGCACTGCGTACCCTAGCTTTTAAAAATGATGAAAATAAAAATCAGATTGTCCAACGGGATGCTCTTCCAACTCTGATTCTAATGCTCCGTTCTGGAGATCCTGCCATTTGTTATGAAGCGGCTGGTGTGATTGGAAATCTGGTGCACTCTTCTCCTAATATAGAGAAAGAAGTTATTCAAGCTGGAGCTTTGCAACCTGTAATTGAATTGCTTCGATCTTCCTGCTCTGAGAGCCAAAGGGCAGTAGCATTGTTGCTTGGACAGTTCACCGCTACTGATTCTGACTGCAAGCTTCATTTTGTTCAGAGAGGTGCTGTTCCATATCTGATAGAGATGCTTCAATCCGATGATGTAGAACTCAAAGAAATGTCTGCCTTTGCCTTGGGGCGATTGGCACAGGAAATCAATAATCAAGCTGATATTGCATACAATGGTGGCTTAGAAACATTACTGAAGCTTCTTGATTCAAAAATTGGGTCTTTGCAACATAATGCAGCTTTTGCACTTTATGGCCTTGCAGATAATGAGGATAATGTGTCCGATTTTATTACGGTAGGTGGTGTTCAGAAACTGCAGGATGGAGAGTTTATTGTTCAAGCGACAAAAGATTGTGTTGCAAAGACATTGAAAAGATTAGAGGAAAAGATTCATGGCCGTGTCCTGAATCATTTGTTATATCTTATGCAAGCTTCAGACAAGGCTGTCCAAAGACTAGTTGCTTTGGCTCTTGCTCATCTTTGTTGTGTGGGTCATCAGAGATTAATATTCATTGATAACAATGGTTTGGAGTTGCTTATTGGGCTTCTTGGTTCTTCTAGCAGAAAGCAGCAACTTGATGGTGCTGTAGCATTATGCAAGTTGGCCAAGAAAGTCATGAATTTATCTCCTATAGATGCTGCTCCCCCATCTCCAACACCTCAGGTCTATTTGGGGGAGCAGTATGTTAACAATGCTACATTGTCCGATGTTACATTTTTAGTTGAAGGGAAGCGGTTTTATGCTCACAGAATCTGCCTACTTGCATCTTCAGATGCATTTCGTGCAATGTTTGATGGAGGTTATCGGGAGAAGGATGCAAGGGATATTGAAATCCCAAATATAAGATGGGAGGTTTTTGAACTAATGATGAGATTCATCTATACTGGATCAGTTGATGTTACTCAGGACATTGCTCAAGATCTCCTTCCAGCAGCTGATCAATATCTCCTAGAAGGACTTAAGAGACTCTGTGAGTACACAATTGCGCAGGCACTCTCACATGATTCAACGTATAATGCCAGAAATCCACGAGTACTTTACAAAAGCGCTTATGAAGGCTAA 1974 0.4402 MELQRRQDQGFSERKGQNRKPEEELEEKSEISAPPPTGRVPDALLPNMKAYVGILESTFSWTESDRAAAKRAAHFLAELAKNEEVVNLIVEGGAIPALVKHLQAPPSCGDDAAEKPFEHEVEKESAFALGLLAVKPEHQQLIVDNGALKHLVDLLKRHNRSPTSRAVNSVIRRAADAVTNLAHENSNIKTCVRMEGGIPPLVALLGFTDIKVQRAAAGALRTLAFKNDENKNQIVQRDALPTLILMLRSGDPAICYEAAGVIGNLVHSSPNIEKEVIQAGALQPVIELLRSSCSESQRAVALLLGQFTATDSDCKLHFVQRGAVPYLIEMLQSDDVELKEMSAFALGRLAQEINNQADIAYNGGLETLLKLLDSKIGSLQHNAAFALYGLADNEDNVSDFITVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMQASDKAVQRLVALALAHLCCVGHQRLIFIDNNGLELLIGLLGSSSRKQQLDGAVALCKLAKKVMNLSPIDAAPPSPTPQVYLGEQYVNNATLSDVTFLVEGKRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTQDIAQDLLPAADQYLLEGLKRLCEYTIAQALSHDSTYNARNPRVLYKSAYEG 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g01403 657 MobiDBLite consensus disorder prediction 1 42 - -
Accr12g01403 657 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 196 231 IPR000225 GO:0005515
Accr12g01403 657 SMART arm_5 135 183 IPR000225 GO:0005515
Accr12g01403 657 SMART arm_5 82 134 IPR000225 GO:0005515
Accr12g01403 657 SMART arm_5 185 225 IPR000225 GO:0005515
Accr12g01403 657 SMART arm_5 227 267 IPR000225 GO:0005515
Accr12g01403 657 SMART arm_5 466 507 IPR000225 GO:0005515
Accr12g01403 657 SMART arm_5 311 351 IPR000225 GO:0005515
Accr12g01403 657 SMART arm_5 269 309 IPR000225 GO:0005515
Accr12g01403 657 SMART arm_5 352 392 IPR000225 GO:0005515
Accr12g01403 657 Pfam BTB/POZ domain 532 634 IPR000210 GO:0005515
Accr12g01403 657 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 363 405 IPR000225 GO:0005515
Accr12g01403 657 SMART BTB_4 539 636 IPR000210 GO:0005515
Accr12g01403 657 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 238 280 IPR000225 GO:0005515
Accr12g01403 657 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 146 196 IPR000225 GO:0005515
Accr12g01403 657 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 322 364 IPR000225 GO:0005515
Accr12g01403 657 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 1 640 IPR044282 -
Accr12g01403 657 SUPERFAMILY POZ domain 531 633 IPR011333 -
Accr12g01403 657 CDD BTB_POZ_ARIA_plant 526 640 - -
Accr12g01403 657 Gene3D - 46 414 IPR011989 -
Accr12g01403 657 Gene3D Potassium Channel Kv1.1; Chain A 520 651 IPR011333 -
Accr12g01403 657 ProSiteProfiles BTB domain profile. 539 606 IPR000210 GO:0005515
Accr12g01403 657 SUPERFAMILY ARM repeat 60 410 IPR016024 -
Accr12g01403 657 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 93 147 IPR000225 GO:0005515
Accr12g01403 657 Gene3D - 416 516 IPR011989 -
Accr12g01403 657 Pfam Armadillo/beta-catenin-like repeat 227 266 IPR000225 GO:0005515
Accr12g01403 657 Pfam Armadillo/beta-catenin-like repeat 189 224 IPR000225 GO:0005515
Accr12g01403 657 SUPERFAMILY ARM repeat 438 507 IPR016024 -
Accr12g01403 657 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g01403 Accr-Chr12 18795100 18802449 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g01403 315 409 U-box Gene Family AT5G40140 37.895 7.34e-10 60.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Accr12g01403 BTB 5.7e-26 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g01403 - - qsa:O6P43_003393 989.178