Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g01329 ATGAAGCCATTTCTGTCATTGAATCATACTGATACTGACGTCAACTGTTCACACCTTGATTCTAATCAATCATCAATGGCTCGTGTTCCTTATCCATACATTGATCCTTTTTATGGTGGCTCTTTAGCAGCTTATGGATCACAGGCTATTAATCAACCCCAAATGGTTCCCCAAATGCTGGGTCTTACATCTACAAGAGTTGCATTGCCACTTGATCTTGCAGAAGATGGGCCCATTTATGTCAATGCAAAACAATACCATGGAATACTGAGAAGGCGACAGTCACGTGCAAAGCTTGAGGCTCAAAACAAACTTATTAAAAGCCGTAAGCCGTATCTTCACGAATCTCGGCATCGCCATGCTTTGAACCGGGTTAGGGGATCAGGAGGACGCTTTCTGAGCACCAGACAGCTTCAACAGTCTAATGCGCAAGTTGTGACTAGTGCCAATTCTGGTTCAGACTCTGTTAACTTGTATCAAAAGAAAGACACATCAGAGGTGGAGATTCATCCCTCGAGGACTGGTGGCACCGGAGAAAATGTATCTTCTATCTCGACCTGTTCTGACAGGACAAGTGGGTCCAGTAACAATGTGAATTTTAGGCAACCAGAGTGCAAGTTCTTGGGGAACTCTCCAAACATGGGCAGTGCATTACAGTGCAGCGGCGGACTCACCTTTGGTGGTGGGACCCAGCAGCGTGTACCCATCGTCCGGTGA 717 0.4616 MKPFLSLNHTDTDVNCSHLDSNQSSMARVPYPYIDPFYGGSLAAYGSQAINQPQMVPQMLGLTSTRVALPLDLAEDGPIYVNAKQYHGILRRRQSRAKLEAQNKLIKSRKPYLHESRHRHALNRVRGSGGRFLSTRQLQQSNAQVVTSANSGSDSVNLYQKKDTSEVEIHPSRTGGTGENVSSISTCSDRTSGSSNNVNFRQPECKFLGNSPNMGSALQCSGGLTFGGGTQQRVPIVR 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g01329 238 PRINTS CCAAT-binding transcription factor subunit B signature 78 100 IPR001289 GO:0003700|GO:0006355
Accr12g01329 238 PRINTS CCAAT-binding transcription factor subunit B signature 109 132 IPR001289 GO:0003700|GO:0006355
Accr12g01329 238 MobiDBLite consensus disorder prediction 163 196 - -
Accr12g01329 238 Gene3D - 75 137 - -
Accr12g01329 238 ProSiteProfiles NF-YA/HAP2 family profile. 75 135 IPR001289 GO:0003700|GO:0006355
Accr12g01329 238 SMART cbf3 74 135 IPR001289 GO:0003700|GO:0006355
Accr12g01329 238 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 12 195 IPR001289 GO:0003700|GO:0006355
Accr12g01329 238 MobiDBLite consensus disorder prediction 175 196 - -
Accr12g01329 238 ProSitePatterns NF-YA/HAP2 subunit signature. 80 100 IPR018362 GO:0003677|GO:0016602
Accr12g01329 238 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 78 132 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g01329 Accr-Chr12 17264306 17265832 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g01329 25 141 CCAAT-HAP2 Transcription Factor Family AT1G17590 62.185 3.98e-42 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Accr12g01329 CBFB_NFYA 3.2e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g01329 K08064 - gmx:100793856 313.923