Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g01300 ATGGTTGAGTTCCCCTCAATTCCTGCTCTTCAAGGAGTAAGTCTTAAAGTCTCCACCATAAACTATGAATCTGGCTACTTAGATGTAGAGGATCCAGAAGGTTGTCTTCCCAGACTCTTTCTACAACACCGTCTCTACAATTCATCCATTTATCCTTTAGAGTTTCCTGGTATGAACGAATACAATGTTACATTCTTCAATTGTTCTTCGCTTGGCTTGAGATACCTCAGAAACGAAGACTTTTCCTATTCATCTGAACAAGATATGTTCGCCTGCCCGATTTATGCTGTTTCCTCCGAAGATAGTATCCTGCACTGGGATGTGGCTTTCTGCACCAAGATGTTTCAGCTAGTTTCGCCAATTGACGATTTTTCCCTTCGTTTCAACTTCTTGTTATTGAAATTTCCACAACCAAAATCTGATGTTGAAAAGCACAAAACCAGCAAGATTCCTGAGATTGTTTTACCAGGTTCAATTCTGCTGGTGGTGGTGTGCATTGCAGGCTTTTACATTATTCGCTACTTCAAAGACAGAGGAGAAGATCAGGTGAGATTGGAAAAATTTTTGGAGGATTATAAGGTACAAAAGCCTACAAGATTTTCTTATGATGATCTGAAAAGAATCACAAATCATTTCAAGGATAAATTAGGTGAAGGAGCTCATGGAGAAGTTTTCAAAGGTTTTTGCGCGGATGGTTTTCATCGTGCTCTTGTTTATGACTTCTTTTCAAATGGTTCCCTTCAAAAGTTCATATCTTCGCCAGACAACAAAGAAACTTTCCTTGGATGGCTGAAGTTGCAACAGTTAGCCCTTGCCATAGCCAAAGGGATTGAATATCTCCATCAAGGTTGTGACTATCGTATTCTCCACTTTGACATCAATCCTCGTAATGTGTTATTAGATCACAATTTTACTCCCAAAATTTCTGATTTTGGTCTAGCCAAATTGTGTTCTAAAAATCAAAGTACGGTGTCAATGACTGCAGCGAGAGGAACTTTAGGTTATATTGCACCTGAAGTCTTCTCTCGAAACTTTGGGAATGTGTCATATAAATCGGATATTTATAGCTATGGAATGTTACTGCTAGAAATGGTTGGTGGAAGGAAAAATGTCGACACAAATCCAAAAACCTTACGAGTGTTATACCCGGAATGGATCCATAATTTGATTGAAGGAGGCGACATAAGTATTTTTATAGAAAATGAATGTGACCTTAAAATTGCAAGGAAACTAGCAATTGTGGGTCTTTGGTGCATTCAGTGGCATCCAATGAATCGTCCATCTATGAAGAGTGTGATACAAATGTTGGAAGGGGAGGTTGATAAATTAAAGGTGCCTCCTGCTCCATTTGACTTTGCAACTTCAGCCAATACAAGTACCACTATTCCTATGAGACATCTAAACTTAGAGCTAGAAGTGATTCATGAATTAGAATAA 1437 0.3862 MVEFPSIPALQGVSLKVSTINYESGYLDVEDPEGCLPRLFLQHRLYNSSIYPLEFPGMNEYNVTFFNCSSLGLRYLRNEDFSYSSEQDMFACPIYAVSSEDSILHWDVAFCTKMFQLVSPIDDFSLRFNFLLLKFPQPKSDVEKHKTSKIPEIVLPGSILLVVVCIAGFYIIRYFKDRGEDQVRLEKFLEDYKVQKPTRFSYDDLKRITNHFKDKLGEGAHGEVFKGFCADGFHRALVYDFFSNGSLQKFISSPDNKETFLGWLKLQQLALAIAKGIEYLHQGCDYRILHFDINPRNVLLDHNFTPKISDFGLAKLCSKNQSTVSMTAARGTLGYIAPEVFSRNFGNVSYKSDIYSYGMLLLEMVGGRKNVDTNPKTLRVLYPEWIHNLIEGGDISIFIENECDLKIARKLAIVGLWCIQWHPMNRPSMKSVIQMLEGEVDKLKVPPAPFDFATSANTSTTIPMRHLNLELEVIHELE 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g01300 478 Gene3D Phosphorylase Kinase; domain 1 184 239 - -
Accr12g01300 478 Gene3D Transferase(Phosphotransferase) domain 1 242 445 - -
Accr12g01300 478 FunFam PR5-like receptor kinase 242 447 - -
Accr12g01300 478 Pfam Protein kinase domain 226 434 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr12g01300 478 ProSiteProfiles Protein kinase domain profile. 148 440 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr12g01300 478 SUPERFAMILY Protein kinase-like (PK-like) 193 437 IPR011009 -
Accr12g01300 478 PANTHER RUST RESISTANCE KINASE LR10-RELATED 227 455 IPR045874 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g01300 Accr-Chr12 16487122 16488811 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g01300 159 449 Receptor kinase-like Gene Family AT1G66910 40.988 1.16e-78 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Accr12g01300 Pkinase 7e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g01300 - - tpra:123893290 541.576