Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g01295 ATGGCTGGAGCTGTGAGTTCTGAATTTTACAACAAAAACTGTAGCTCTCAGTGTGGCAATATCACAAACATCTCATATCCATTCCGACTACCACAAGACCCACTCCACTGCGGCGACCCCAGTTACGAGCTAGCCTGTGAAAACAACGTCACTCTCCTTCATGTGAAGAATGGAACATACCGGGTGGTAGCAACATACAGAGTGGTGGGAATAAACTACGACAAATTGAGAATCAAACTCGTAGATCCAGGAATTCAGGCGGGCAATTGCTCATCCCTCCCTCTCTATTCCTTATCCAAATACGACTTCAGCTATTTCTGGCGGAGACTTTACGATTATGAAGAACGTACCTATAGTACTCCAAACGTGTGGACAATATCATTCACACATACAGAAGTATTCAAGCAGGTGGCGTACCTGAACTGCAGCGATCCAGTGAGAGAGGACACAGCGTATGTGGATACGGCTCCTTGTGTGAAAGGAGGAGGCCATCTTTATGCCGTGGCTGGTGACTTGTTGGCTTCCCAGTTTCAACCTCACTGTCGTCTGGAATTAGTGACCCTCGTAGCCTCAGATTGGGAATCGTTAGTGCCTCATGGAATCAAGTCCTACGCTGATATTCACACACTCCTTTCCTTTGGATTTGAACTTTCATGGTGGCAACGAGCTTGTGCTGATAATAATTGTTCGGTTCCGACTGATGACTGCGCTTTGAGCGCTAAAAATCGAAGCGCAGATTGCATTGGAATTCCACGAGGCCCAAGGCTGCTCAGATTTGCAATAGATTATATCACGGGAATTTTGAAAGGACTACTCCAGATAGCGAACAATCCTGTACCCTTCGACCCTTACGATGATTCTGGGCCATCAAAGCTTCTGTTCAAATTAGGAGAGTTCACTGGAAGATTTGTTTTGCCATATATCACGTTCAGATTTTTGTTTGGTGTTGTTTTGTTGTCTATAATGTTGATCTATACATACCGTAGAAGGCACCTGTCAATATATGAAGATATTGAAGATTTTATAAGACTTCATCATGACCTTATTCCAATAAGGTACTCTTACAAGGATTTGAAGACAATGACCGAAAATTTCAAGAATAAGTTGGGTGAAGGAGGCTTCGCTACTGTGTTTAAGGGAAAGCTAAGGAGTGGACCTGACATTGCTATCAAAATGTTACGTAAATCCAATAAAGCTAATAATGACCAAGATTTTATGAGTGAAGTGGCAACTATTGGGAGGATACACCATTTCAATGTGGTACATCTTGTAGGGTTTTGTGTTGAAGGAACAAAATGTGCCCTTGTCTATGAATTTATGTCCCGTGGATCTTTGGATAAACATATTTTTTTCTAA 1356 0.4248 MAGAVSSEFYNKNCSSQCGNITNISYPFRLPQDPLHCGDPSYELACENNVTLLHVKNGTYRVVATYRVVGINYDKLRIKLVDPGIQAGNCSSLPLYSLSKYDFSYFWRRLYDYEERTYSTPNVWTISFTHTEVFKQVAYLNCSDPVREDTAYVDTAPCVKGGGHLYAVAGDLLASQFQPHCRLELVTLVASDWESLVPHGIKSYADIHTLLSFGFELSWWQRACADNNCSVPTDDCALSAKNRSADCIGIPRGPRLLRFAIDYITGILKGLLQIANNPVPFDPYDDSGPSKLLFKLGEFTGRFVLPYITFRFLFGVVLLSIMLIYTYRRRHLSIYEDIEDFIRLHHDLIPIRYSYKDLKTMTENFKNKLGEGGFATVFKGKLRSGPDIAIKMLRKSNKANNDQDFMSEVATIGRIHHFNVVHLVGFCVEGTKCALVYEFMSRGSLDKHIFF 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g01295 451 ProSitePatterns Protein kinases ATP-binding region signature. 369 391 IPR017441 GO:0005524
Accr12g01295 451 Pfam Wall-associated receptor kinase galacturonan-binding 14 82 IPR025287 GO:0030247
Accr12g01295 451 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 11 449 IPR044652 GO:0004672
Accr12g01295 451 SUPERFAMILY Protein kinase-like (PK-like) 339 450 IPR011009 -
Accr12g01295 451 Pfam Protein tyrosine and serine/threonine kinase 365 448 IPR001245 GO:0004672|GO:0006468
Accr12g01295 451 FunFam serine/threonine-protein kinase PBS1-like 335 439 - -
Accr12g01295 451 ProSiteProfiles Protein kinase domain profile. 363 451 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr12g01295 451 Gene3D Phosphorylase Kinase; domain 1 343 439 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g01295 Accr-Chr12 16340631 16344090 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g01295 316 449 Receptor kinase-like Gene Family AT4G18250 42.336 2.05e-25 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Accr12g01295 PK_Tyr_Ser-Thr 3.4e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g01295 - - pcin:129321062 414.461