Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g01293 ATGAGTTCTAAGGATGAGACCAAAACCTGTAATCCGTCTCGTTGCGGCGTTATCACAAACATCTCATACCCATTTCGTCTCCGAGACGACCCACCCAACTGCGGCCTCCGCCCTTTCGAGTTAGCCTGTGAAAACAGTGTCGCTTTGCTTCATCTCCATTTAGGAACATCAGATTCAACATACCAAGTTATGGGAATCAACTACGACAACTACACAATCCGACTCAGAGATCCCGGCATTCGGGCGGGTGATTGCTCCTCCCTCCCTCGTTATTTCTTATCCAAATCTAATTTCAGTGACACTTATGATCAACACTACCAATATGATAGCAACCAAAATCCCTATGTTGCCTCTCTAGGACCAGCACCCTATTCAAACCTTACGGTTGACCACGTCATTTACCTGAAGTGTAGTGATCCGGTGAGGGACGACGCAGGCTACGTGGATACGGCTGCCTGCGTGGATTGGGGATCCAACAGAGGAGGAGGAGGAGGAGGTGAGCACGTGTATGCCGTTGTTGGAGACTTAGAGGCTGAGAGGTTGAAACCTGAGTGTCGCGTGAAATCAGTGGCTACTATTGATAAAGATTGGAGATCATTCCTAAGGGGGAAAAGCTACACGTACGTTGATATTCACAGACTGCTTTCCCTTGGTTTTGAACTTTCATGGTGGAATCAAGCTTGTTCGGATCATCATTGTGCAAGTTACGAGTTTTGCTTCTTCGACGATAGTTCCACGCAAAGGATCTCTTGCTCCGCAAAAGGGAGTAGCTGTTTCAGTACTGATCGAGTATCTTTTCCTCTCTTTTGTGGAAATATGGCAAATCTGAACCATCGTGTAGAAGCATTTCTCGTTGGCATTCTTGCAGGCTTGCCATCCTCTAATAAGGATATTCGTGAACTTGTAGATTTTGCGTATTCGTCGATAGAGTCCGACTCTGGTGATGAATATGCTCGTGATTTAATTTCAATACCAGTTGCATTCACCTTAGGAAAAATCACAGCATATGTTTCTACAGCCATTATTCTAAGATTTCTGGTTGGTATATTATTGCTCTTCATCTTGTTAATTTACACTTATCGGAGAAGACACTTATCAATGTATGAAAGTATTGAGGATTTCATAAGACTTCATGACCTTCATCCAATAAGGTACTCCTACAAGGATTTAAAGACTATGACTAAAGGTTTCAAGGATAAGATTGGTGAAGGAGGCTTCGCCACTATATACAAAGGCAAGTTAAGGAGCGGATATGATGTTGCTGTTAAAATGTTGGATAAATCCAAAGCTACTAGCCAAGAATTTATCAACGAAGTGGCAACTATAGGAAGGATACATCATTTCAATGTGGCACGTCTGGTTGGTTTTTGTGTGGAAGGAACGAAACGTGCTCTTATATATGAATTCATGTCCAATGGATCTTTAGATAAACATATTTTTCTCAAAGAAGGAAGTGTCTCCTTGAGTTATCATAGAATATATGAGATATCTTTAGGAGTGGCTCGTGGCATTGCTTATCTTCATCATGGTTGTGACATGCAGATATTGCACTTTGATATCAAGCCTCAAAATGTTCTTCTTGATGACAACTTGACCCCAAAAATTTCAGATTTTGGACTTGCGAGGTTGTATTTTACTGATGATAGCATCTCCACTTTGACTACAGCAAGAGGCACAATAGGATACATGGCTCCTGAACTATACTATAAGAATATTGGGAAAGTGTCCCATAAATCCGATGTTTACAGCTTTGGAATGCTTTTAATGGAGATGGCAAACCGAAGAAAGAATTTGAACCCACATGCTGAACATTCCAGCCAACTTTACTTTCCTTCATGGATTTATGACCATTTTGATGAAGAGAATGATATAGAAATGGAGGATTTGACAGAAGAGGAAAAGGTTTTGGCAAAGAAAATGTTCATTGTAGCACTATGGTGCATTCAATTTAATCCTGCAGATCGCCCTTCAATGAACAAAGTAATAGAGATGTTGGAAGCGGATGATTTTAGAAGCCTTGAAATGCCTCCAAAACCTTCTATATATCCTGAAAATGACCATTCCAACTTTGACCAAACAACATCTTCAATGTTCTCCCAAAGCTCTCATGGCGATCTAGGTGATGAGGATGCAAGTGACAGGACTTATTAA 2151 0.4119 MSSKDETKTCNPSRCGVITNISYPFRLRDDPPNCGLRPFELACENSVALLHLHLGTSDSTYQVMGINYDNYTIRLRDPGIRAGDCSSLPRYFLSKSNFSDTYDQHYQYDSNQNPYVASLGPAPYSNLTVDHVIYLKCSDPVRDDAGYVDTAACVDWGSNRGGGGGGEHVYAVVGDLEAERLKPECRVKSVATIDKDWRSFLRGKSYTYVDIHRLLSLGFELSWWNQACSDHHCASYEFCFFDDSSTQRISCSAKGSSCFSTDRVSFPLFCGNMANLNHRVEAFLVGILAGLPSSNKDIRELVDFAYSSIESDSGDEYARDLISIPVAFTLGKITAYVSTAIILRFLVGILLLFILLIYTYRRRHLSMYESIEDFIRLHDLHPIRYSYKDLKTMTKGFKDKIGEGGFATIYKGKLRSGYDVAVKMLDKSKATSQEFINEVATIGRIHHFNVARLVGFCVEGTKRALIYEFMSNGSLDKHIFLKEGSVSLSYHRIYEISLGVARGIAYLHHGCDMQILHFDIKPQNVLLDDNLTPKISDFGLARLYFTDDSISTLTTARGTIGYMAPELYYKNIGKVSHKSDVYSFGMLLMEMANRRKNLNPHAEHSSQLYFPSWIYDHFDEENDIEMEDLTEEEKVLAKKMFIVALWCIQFNPADRPSMNKVIEMLEADDFRSLEMPPKPSIYPENDHSNFDQTTSSMFSQSSHGDLGDEDASDRTY 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g01293 716 Gene3D Transferase(Phosphotransferase) domain 1 470 674 - -
Accr12g01293 716 MobiDBLite consensus disorder prediction 675 716 - -
Accr12g01293 716 ProSitePatterns Serine/Threonine protein kinases active-site signature. 515 527 IPR008271 GO:0004672|GO:0006468
Accr12g01293 716 SUPERFAMILY Protein kinase-like (PK-like) 380 666 IPR011009 -
Accr12g01293 716 ProSitePatterns Protein kinases ATP-binding region signature. 401 423 IPR017441 GO:0005524
Accr12g01293 716 MobiDBLite consensus disorder prediction 685 705 - -
Accr12g01293 716 SMART serkin_6 395 665 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr12g01293 716 Gene3D Phosphorylase Kinase; domain 1 362 469 - -
Accr12g01293 716 ProSiteProfiles Protein kinase domain profile. 395 671 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr12g01293 716 FunFam PR5-like receptor kinase 470 677 - -
Accr12g01293 716 PANTHER RUST RESISTANCE KINASE LR10-RELATED 368 687 IPR045874 GO:0004672
Accr12g01293 716 FunFam S-receptor-like serine/threonine-protein kinase 366 469 - -
Accr12g01293 716 Pfam Protein tyrosine and serine/threonine kinase 397 665 IPR001245 GO:0004672|GO:0006468
Accr12g01293 716 Pfam Wall-associated receptor kinase galacturonan-binding 10 77 IPR025287 GO:0030247
Accr12g01293 716 CDD STKc_IRAK 401 666 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g01293 Accr-Chr12 16263810 16271508 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g01293 301 703 Receptor kinase-like Gene Family AT4G18250 43.099 1.30e-103 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Accr12g01293 PK_Tyr_Ser-Thr 5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g01293 - - pcin:129321062 875.544