Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g01283 ATGGCGGGAACAGCACCTGAGGGTTCACAGTTTGATGCTCGTCAGTTTGATACCAAGATGAATGAATTACTTGATGGGCAGGATTTCTTTGCATCTTATGATGAGGTTTATGATAGTTTTGACGCTATGGGCTTGCAGGAGAATCTCCTGAGAGGCATTTATGCATACGGTTTTGAGAAGCCATCGGCCATTCAGCAGAGGGGAATTGTTCCCTTCTGCAAGGGACTTGATGTTATTCAACAAGCTCAATCTGGAACTGGGAAGACAGCAACATTTTGCTCTGGAATTTTGCAGCAACTTGAATATGGTTTGACAGAATGCCAGGCTTTGGTCCTAGCACCAACACGAGAGCTTGCTCAGCAAATTGAGAAGGTTATGCGAGCACTGGGAGATTATCTAGGTGTAAAGGTGCATGCATGTGTGGGAGGAACTAGTGTCCGTGAAGACCAACGCATTCTCTCTAGTGGTGTTCATGTTGTTGTTGGTACTCCTGGCCGAGTATTTGATATGCTGCGCAGACAGTCACTTCGACCAGATTACATCAAGATGTTTGTGTTGGATGAGGCTGATGAGATGCTCTCCAGAGGTTTTAAAGACCAGATTTACGATATATTCCAGTTGCTGCCAGGCAAAATTCAAGTGGGAGTGTTCTCTGCTACTATGCCTCCAGAGGCCCTGGAGATCACAAGGAAATTTATGAACAAACCTGTTAGGATCCTTGTGAAGCGTGATGAGCTTACCTTGGAGGGAATAAAGCAGTTTCATGTCAATGTAGAAAGAGAGGAATGGAAGCTGGACACTCTCTGTGATCTTTATGAAACATTAGCTATCACTCAGAGTGTCATTTTTGTGAACACCCGAAGGAAGGTTGATTGGCTTACTGACAAGATGCGAAGCCGGGACCACACAGTGTCAGCAACCCATGGAGATATGGACCAGAATACTAGAGACATAATCATGCGGGAGTTCCGATCCGGTTCTTCCCGTGTTCTGATCACAACAGATCTTTTGGCTCGTGGTATTGATGTCCAGCAAGTGTCTCTAGTTATCAACTATGATCTCCCAACACAGCCTGAGAACTACCTCCATCGTATTGGTCGTAGTGGTAGGTTTGGGAGAAAAGGTGTCGCCATCAACTTTGTGACAAAGGATGATGAAAGAATGCTGTTTGACATTCAGAAGTTTTACAATGTGGTAATAGAGGAGCTGCCATCAAATGTTGCTGAACTCCTCTAA 1236 0.449 MAGTAPEGSQFDARQFDTKMNELLDGQDFFASYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLEYGLTECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVEREEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLFDIQKFYNVVIEELPSNVAELL 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g01283 411 CDD DEADc_EIF4A 42 240 - -
Accr12g01283 411 FunFam Eukaryotic initiation factor 4A-II 26 245 - -
Accr12g01283 411 CDD SF2_C_DEAD 251 381 - -
Accr12g01283 411 Gene3D - 247 411 IPR027417 -
Accr12g01283 411 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 185 193 IPR000629 -
Accr12g01283 411 FunFam Eukaryotic initiation factor 4A-III 246 411 - -
Accr12g01283 411 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 250 411 IPR001650 -
Accr12g01283 411 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 38 66 IPR014014 GO:0003724
Accr12g01283 411 Gene3D - 28 246 IPR027417 -
Accr12g01283 411 SMART helicmild6 291 372 IPR001650 -
Accr12g01283 411 Pfam Helicase conserved C-terminal domain 264 372 IPR001650 -
Accr12g01283 411 PANTHER RNA HELICASE 34 395 - -
Accr12g01283 411 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 107 392 IPR027417 -
Accr12g01283 411 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 69 239 IPR014001 -
Accr12g01283 411 Pfam DEAD/DEAH box helicase 63 224 IPR011545 GO:0003676|GO:0005524
Accr12g01283 411 SMART ultradead3 57 254 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g01283 Accr-Chr12 15690261 15692046 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g01283 1 411 Eukaryotic Initiation Factors Gene Family AT1G72730 87.923 0.0 756
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g01283 K03257 - gmx:100788218 796.578