Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g01277 ATGGTAGTTGCTCACGGTGGATCCGGCGGAATCAGCGGCGGTGGAAGGTCAGAATCCATTTCTACAGTTATGTTGAAGGAATCCATGGCAAGAGTAGGACGTGTAAAACCAGAGCAAGTAATGGTGTCCGATGACGACACCAGTCGTTCGAGTTCCGGTGGATACTGCGATGTTGAAGGTGAACCAAACGACGTCGTTTTCAGTGAGGATTCGGGAAGGAATAGCTCACAAGTGACGGATGAGGAGCTTATTGAACCGGTTCCACCGGTTCACGTCAAGCTCGAAGAACCGGGTGGAGCGGTGGTTGAGGTTGATGGCGGTGCTGGAGTTAATAGGTCGTCTTATTTGTCGCCAGTCTCCTTTCCGAAGCCGATGGAAGGGTTGCACGAGGTTGGCCCACCGCCGTTCCTCAAGAAGACGTTCGAGATGGTGGAGGACCCGGTGACCGACCCGATTGTGTCCTGGAGTGAAGCTCGTGATAGCTTCATCGTTTGGGATTCCCACGAATTCTCCAAAATTCTTCTTCCGAAGTACTTCAAACACGGAAATTTCTCCAGCTTCATTCGCCAGCTTAACACATACGGATTTCGGAAGGTTGATTCCGACCGGTGGGAGTTTGCCAACGAAGGATTTCAGGGTGGAAAGAAGCATTTGCTGAAGAACATTAGGAGAAGAAGCAAGTATAATAACAAACTGCAACAAGGAGGAGCATTGGCTTCCATGAAACCTGGGTTGGAGGCTGAAGTTGAGGGATTGAAGAAGGATCAGAACATAATGAAAGTGGAAATTCTGAAGCTGAGACAGCAACAAGAGACCACACAGGTTCAACTTGTGAGTGTCCAAGAACGTGTTCGGTCTGCCGAGTTGAAGCAGTGCCGGATGATGTATTTCCTGAGCAAAATGGCCAGAAGACCAACTTTGGTTCAGCAGTTAATCCAGAAGGTTAAGCGAAAAAGAGAACTTGGCGGCGATGAGATTAGTAAGAGACCCAGATTGCTTGGAACACATTGCCCTTTAAACTCCCCTAAGGCCATAGACACCAGTGCTGATGTTGATTATAGACAAGGATTAAGGACCAATAATAATGCTTCAAGGGCAAGTGCGGCTAACGATGTATCTTCCGCGGCTTGCTGTATGATGTCGGAAAAGCTGATGGAAGAGAACTCTGTTGTTGAAGAAGGGCTTGATGTGAATGATTCAAATATCTACCTTGAATTGGAGGATTTGATTGGCAAACCAACTGACTGCGTTGGATCTGCAAGTGGATTGGTGGGGCAAACTGGTTGTATCTGA 1293 0.4795 MVVAHGGSGGISGGGRSESISTVMLKESMARVGRVKPEQVMVSDDDTSRSSSGGYCDVEGEPNDVVFSEDSGRNSSQVTDEELIEPVPPVHVKLEEPGGAVVEVDGGAGVNRSSYLSPVSFPKPMEGLHEVGPPPFLKKTFEMVEDPVTDPIVSWSEARDSFIVWDSHEFSKILLPKYFKHGNFSSFIRQLNTYGFRKVDSDRWEFANEGFQGGKKHLLKNIRRRSKYNNKLQQGGALASMKPGLEAEVEGLKKDQNIMKVEILKLRQQQETTQVQLVSVQERVRSAELKQCRMMYFLSKMARRPTLVQQLIQKVKRKRELGGDEISKRPRLLGTHCPLNSPKAIDTSADVDYRQGLRTNNNASRASAANDVSSAACCMMSEKLMEENSVVEEGLDVNDSNIYLELEDLIGKPTDCVGSASGLVGQTGCI 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g01277 430 SMART hsfneu3 132 225 IPR000232 GO:0003700|GO:0006355|GO:0043565
Accr12g01277 430 SUPERFAMILY "Winged helix" DNA-binding domain 132 225 IPR036390 -
Accr12g01277 430 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 122 354 IPR027725 -
Accr12g01277 430 FunFam Heat shock transcription factor 1 129 226 - -
Accr12g01277 430 Pfam HSF-type DNA-binding 136 225 IPR000232 GO:0003700|GO:0006355|GO:0043565
Accr12g01277 430 Gene3D - 129 226 IPR036388 -
Accr12g01277 430 ProSitePatterns HSF-type DNA-binding domain signature. 175 199 IPR000232 GO:0003700|GO:0006355|GO:0043565
Accr12g01277 430 MobiDBLite consensus disorder prediction 34 80 - -
Accr12g01277 430 PRINTS Heat shock factor (HSF) domain signature 174 186 IPR000232 GO:0003700|GO:0006355|GO:0043565
Accr12g01277 430 PRINTS Heat shock factor (HSF) domain signature 136 159 IPR000232 GO:0003700|GO:0006355|GO:0043565
Accr12g01277 430 PRINTS Heat shock factor (HSF) domain signature 187 199 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g01277 Accr-Chr12 15566990 15568867 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g01277 122 415 HSF AT2G26150 43.934 1.60e-84 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Accr12g01277 HSF_DNA-bind 6e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g01277 K09419 - gmx:100818430 433.721