Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g01276 ATGGCTTTTCCTCATTACCGTCGATCACATTTGAGGAGTGGAACTTATCATACCCTGGTTCGTATCCTATCCCACTGTAGCAATGAGTGCAGTCTTCAGGGAACCAACGAAAATCATTCTGCTTCTCAATTGTTAAAAAATCATGATAATGGCATCGATAAATTGGGGCAAGAAAGCCAGGAAAAGGAATCTGAGAACTTGCAATTTTCTGGTGCTCATCTTATGAATCTCAAGCGTCCTGTATCCCATAAGGAAAAACAGGTTCATGAGAGTTCTGATGGTAGGGACTTTATAATGGGAGTAGAGGAAGATGTAGGCTCTACTGGAAAGCAGGATAAGATGATTTGTGAAAGAGAAAGTGTTGAGGCCTTGTCCATGGGGACTAATGGTTTGAATAAGGAACAGGAGAAAATAGAAGAGTTAAATCAGTTAGTGAAAGGAACTGAAAACCTTATTGACAATGGCTCAATTCCTTTGAACTTGGGATTAGGTGAAAACCAAAATGGAAGCAGTGAAGTTGACTTGATGGATTACCCAGTGGATTATGTTGAATTTAGAGGATCCGATAGCAATACATCTGGAACTAAAAGTAAGTTATATATTGAAGGAGAATTTAGTCAAAATATCTCTGAAGGCTTTGATGCATCTTCAATTGTTAACATTTCGAGATCTGAAAAAAAGGAAACCTCTGTACCCGAAATTATCACATCAAGTATAACACACGAGAGACAACACAAAGAAATGGAATTGGTGAAAACACCTTGTGCTGCAATGGTTTCTCTTCCTAATATTGAAGAGGGTGAGCTTGAGAAGGAAGAACATGGTCAAAAGGTTCATCTGGCAACACACCTTTCTCAAGAAGATGGTATTACTTGGAGTATTGAGCTCGAGAGACTACAAAAGGAAATGGAGCTGGAATTCGTGAAACCTGTTTCTGCTTCAGTTGTTTCTCTTCCTTCTACTGAAGAGGGTAAGTTTGAGGAGGAAGAACAACATGGTCAAAAGGTATGTGAGGCTATGCAATTTTCTATCGGTCAGAGTATGAATAGTGAAGATTCAAATTCAAGTGTAAAGCATAAGAAACAAAAAGGGGAAATGAACTCAGTAAAACCAGTTGGTGCAGCAATGGTTTCTCTTCCTACTCCCAAAGAGGGTGAGTTTGAGAAGGAAGAACAACGTGGTCAAAAGGCTTCTGAAGCAATGCATGTTTCTGTAGGTCAGGCTATGAATAGTGAAGCATTGATTTCAAGTATAAAGCCCAATAGACAACATAAAGAAATGGAATTAGTGAAACATGTTTTTGCTGCAATTATTTCTCTTCCTACTACTGAAGAGGGTGAGTTTGAGAAGGAAGATCAACAGGGGCAAAGGGTTTCTGAAGCAATGCAATTTTCTATGGATCAGGATATGAATAACGAAGCATCAAATCTACATACAAAGCATGATAAACAACAAAAGGAAATGGACTCATCGAAATCAGTTTGTGCTGCAATTGTTTCTCTTCCTACTAGCAAAGAGGGGGAGTTTGAGAAGAAAGAACGACACGGGCAAAAGGTTCCTGAAGCAATGCACATTTCTGTAGATCAGTCTATGGATAGTGAAGCATTGATTTTGAAAACAAAGAAGCCTGAAATACAACAAAATGAAATGGAATTGGCTGAACCTGCCTGTCGTGCAATTTTTTCTCTTCCTGGTATTGAAGAGGATGAACTTGAGAAGGAAGAAGATAATGGTAGTGATGGTTCCAAACCCACCAAGATATATGTTAGGAAGAGTAAGAAGAGGGATTTGGGCCACTTAGACCTATCAGGTAGAAAGGTCCCTGAAGCAATGCACTTATCTGTAAATCAGAGTATAAATGGTGAATCATTGAATTTTAGCGAATATAGTGAAGAGGTGTCATTCATGGACATTGATATTATGGAAGCTAAACATGTAATACAACATGAAGAAGAGCTGCCTCAAAAAATAACTCACGCAAATGATGCAACATTTTCCAATCATCCAGATAAGGAAGACGACATTGAAGAGGGAGAACTTTCAGGTGACTTTAGAATGGATGGGAGTTCAATTGATGGGTCTTCTCCAGAATCTTTAATGCTAGAACAGAGGGAACATGATGTACAAAAGCCCAAACATGTTATTGAAAATATAGTATTTCCTTTTAATATAAAGAAAGAAGAAAAAGAAAAAGAAAAAAAATTCAAATCAACTCAAGATGCCTGTAACAGTGCATTAATGGAACCTAGGAAAATTGATAAACATGGCTTTCCAAATGGAGTTGACTTTGGAATCTCTCGGGAAATTATTGATTATGGAGATATAGTGGAGCATGATTCTTTATTGGTGACTGGAAAAAGTGAAGACAGTGGAATTAAAGGGGTTGTTGGCTTGCCAGCAACTTTGGCTAACAAAAAAGTCTCGCCCAAAGTTGTCTTGGAAGAAGAAGCCGCCAAAGATCATCAAAACACATCTGCAGTAAAGAAAGCTGGCATCAGTTGTAAGAAAAAGCGTGGTCCTGTTTCTGAGGACAAGAAGGCGAAAAAGAAGGAAAAGAAAAGAAAGCAGCGGGCAGAAAAGAACAGAAAACTTGGTGTTAAAAGGTTGAAATTGCAGCCAGTACAGAAACCAAAAATTATCACACATTGCCGCCATTATCTGGTCGGAAGATGCAATGAGGGCGACAAGTGCAAGTTCTCACATGACATTGTGCCTCTGACAAAATCAAAGCCTTGCTGTCACTTTGCCCGTCACTCTTGCATGAAAGGTGATGACTGTCCATTTGATCATGACCTCTCCAAGTATCCTTGTAGCAATTTTGCGTCTAAAGGTTCTTGCAGCAGAGGGAACGCTTGTATGTTTTCACACCAGATGCCAGCCAAGCAAGATGTTGCCACATCTTCAAATGATAGCAAAGCTGAGTTGAAGCCTAAACTATTAGGAAATACAAAATTGAGTAAGCCACCTAACATCAGCAGCAGTGCTTCTGAGCAGAAACAAATCTCTGATTCAAAAAAAATTCAACCTCACTTCAATTCAGAAAAAGAGGCGGCAGACACTGTAAAGAAACCACCGACATTGGTACCTAAAGGAATTAGTTTCATCAATGTTTCAAAATCATCATCTCCAAAACAAGGGATGGTAACTCCAAACAAGGAAAATTCTGTTCAAATTGGGACCACTACTGGCCAAAGTGCATCATCTGGCACAGCTTTGAACTCAACAAATCCTGAGAAAACGCCAGTGGTGGCACCTAAAGGAATTAACTTCCTTTCATTTGGAAAAGGTCGTGTTTCCAGTTTCAAAAGTACTGTCTGCTCCTTTTTGAATAAGGAAAATGGCATCAAGTTGTCCCGCAAAGAAAGTTTAGGTACACCCGAACAAGCATCTCTACAGAAGGATGATTGCACTAAAGTTGGCAGTGGGACAAAACAAAGTGTACTGCAGACTGCTGCGTGCTCAAATGAGATTTTAAATCAAAATCAATGTGTAGCAGAGAAAATGGATCTGGGTTTTCAAGGAAAAGCTTCAATACATCATTATAGTAATGATGTTCAATCTAGCTCGACCTCTCATCAGGATCACGGTCTTAGTAGATCAATGCAAGAGGGAGTGAAGACATATACTCCTCAGACTTCAACTCTCACCTCGTCTTTGGTTCCAACCTCTCCATTTGTTTCAGGTCAATCTTCAGAACGCCTAGCATCTGGACATCATAAGCACGTATTTAACTCAGCCCAAAGGGCACTATTATCAACCCTATCATTTGCAGCAGAGCACGAGTCCAATATTAAGCTAAAGTTCCCTGTTGGTGCTTCAGCTGTTAAATCAGAGATGAACAAGGATGTATAG 3852 0.3943 MAFPHYRRSHLRSGTYHTLVRILSHCSNECSLQGTNENHSASQLLKNHDNGIDKLGQESQEKESENLQFSGAHLMNLKRPVSHKEKQVHESSDGRDFIMGVEEDVGSTGKQDKMICERESVEALSMGTNGLNKEQEKIEELNQLVKGTENLIDNGSIPLNLGLGENQNGSSEVDLMDYPVDYVEFRGSDSNTSGTKSKLYIEGEFSQNISEGFDASSIVNISRSEKKETSVPEIITSSITHERQHKEMELVKTPCAAMVSLPNIEEGELEKEEHGQKVHLATHLSQEDGITWSIELERLQKEMELEFVKPVSASVVSLPSTEEGKFEEEEQHGQKVCEAMQFSIGQSMNSEDSNSSVKHKKQKGEMNSVKPVGAAMVSLPTPKEGEFEKEEQRGQKASEAMHVSVGQAMNSEALISSIKPNRQHKEMELVKHVFAAIISLPTTEEGEFEKEDQQGQRVSEAMQFSMDQDMNNEASNLHTKHDKQQKEMDSSKSVCAAIVSLPTSKEGEFEKKERHGQKVPEAMHISVDQSMDSEALILKTKKPEIQQNEMELAEPACRAIFSLPGIEEDELEKEEDNGSDGSKPTKIYVRKSKKRDLGHLDLSGRKVPEAMHLSVNQSINGESLNFSEYSEEVSFMDIDIMEAKHVIQHEEELPQKITHANDATFSNHPDKEDDIEEGELSGDFRMDGSSIDGSSPESLMLEQREHDVQKPKHVIENIVFPFNIKKEEKEKEKKFKSTQDACNSALMEPRKIDKHGFPNGVDFGISREIIDYGDIVEHDSLLVTGKSEDSGIKGVVGLPATLANKKVSPKVVLEEEAAKDHQNTSAVKKAGISCKKKRGPVSEDKKAKKKEKKRKQRAEKNRKLGVKRLKLQPVQKPKIITHCRHYLVGRCNEGDKCKFSHDIVPLTKSKPCCHFARHSCMKGDDCPFDHDLSKYPCSNFASKGSCSRGNACMFSHQMPAKQDVATSSNDSKAELKPKLLGNTKLSKPPNISSSASEQKQISDSKKIQPHFNSEKEAADTVKKPPTLVPKGISFINVSKSSSPKQGMVTPNKENSVQIGTTTGQSASSGTALNSTNPEKTPVVAPKGINFLSFGKGRVSSFKSTVCSFLNKENGIKLSRKESLGTPEQASLQKDDCTKVGSGTKQSVLQTAACSNEILNQNQCVAEKMDLGFQGKASIHHYSNDVQSSSTSHQDHGLSRSMQEGVKTYTPQTSTLTSSLVPTSPFVSGQSSERLASGHHKHVFNSAQRALLSTLSFAAEHESNIKLKFPVGASAVKSEMNKDV 1283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g01276 1283 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEI 614 1282 IPR045124 GO:0003723|GO:0045892
Accr12g01276 1283 Coils Coil 841 861 - -
Accr12g01276 1283 MobiDBLite consensus disorder prediction 962 1025 - -
Accr12g01276 1283 Gene3D - 832 907 - -
Accr12g01276 1283 MobiDBLite consensus disorder prediction 347 368 - -
Accr12g01276 1283 Gene3D - 908 972 - -
Accr12g01276 1283 ProSiteProfiles Zinc finger C3H1-type profile. 877 904 IPR000571 GO:0046872
Accr12g01276 1283 SUPERFAMILY CCCH zinc finger 878 902 IPR036855 GO:0046872
Accr12g01276 1283 ProSiteProfiles Zinc finger C3H1-type profile. 936 959 IPR000571 GO:0046872
Accr12g01276 1283 MobiDBLite consensus disorder prediction 818 864 - -
Accr12g01276 1283 Pfam CCCH-type zinc finger 882 902 IPR041367 -
Accr12g01276 1283 MobiDBLite consensus disorder prediction 1061 1080 - -
Accr12g01276 1283 Coils Coil 131 151 - -
Accr12g01276 1283 ProSiteProfiles Zinc finger C3H1-type profile. 906 933 IPR000571 GO:0046872
Accr12g01276 1283 MobiDBLite consensus disorder prediction 848 864 - -
Accr12g01276 1283 MobiDBLite consensus disorder prediction 985 1007 - -
Accr12g01276 1283 SMART c3hfinal6 906 932 IPR000571 GO:0046872
Accr12g01276 1283 SMART c3hfinal6 878 903 IPR000571 GO:0046872
Accr12g01276 1283 SMART c3hfinal6 934 958 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g01276 Accr-Chr12 15553505 15559092 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Accr12g01276 zf-CCCH_4 2.9e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g01276 - - pcin:129320444 1394.79