Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g01272 ATGGACGCTGTCTTCTCCCTCCCCGAGGCTGCCAGAGCTCATTTTCTGCAGTCTATACTGCATTCCTCAGGCTGCTCATACATTTGCCTTTGGTCCTATGATTCCCTCTTATCCAATCGTTTGCTGTGTTTGGATGGATTGTTCAATGTGAGAATCAACCAACCGAGCACCTCTTTGGGGAGCAGTGTCGCTCAAAGGCTTTTTGACCAATACAGGAGTTTGCTATTTGAAGTCACTGATAACGACCGTATTCCAGGACTGGCTTTCAAGAACCGCACTTACCTTGAGCTGCAGCAACCAGATCTTCTAAGATTAGCATGGACACCAATACAAACACAATTTTATCAGGAAGCAAGGATTAAGACTGCAGTCTTCATGGGGTGCAACAATGGAGAAATGGAACTTGGCTTTCCAAACATGTCTCAGGATGATATTCAAACAGCACTGAGGAATTGGTTCCCAGATGAATTTTCCAGATTAAATCAGCAGCAGCCAAATATGGATCAGAGTCAGAATCAGAACCAGAACCCACCATCATCATCTTCATCATCATTAAGATCACTCTCATTATCTGCAGGGAGCCCTGAATACTCATCCCTTCTCTTAAACATTCCTTCTGCATCTTCCCCTCATTTTCCTCCCCCTCCTCCTCTGGCTCAAGTCACCGCACAGAGCCCATTTCCTCCACCAGACTCCGAAAATGAAGCCATCATGAGAGCAATCCTTCATGTCCTTTCCACTAGTACTACTTCTTCTTCATCACCTCCTTCTCTTCCTCAGAATTTTCCTAATCCTAGTAATTATATGGTTCATCCTGAGGCTAGTGCCTTCAAGAGGTACAACCCCACCGGGATTATCCCGCCACCGCGGCCGCCATTATCTCAAATGGGACCGGATCATCAATTGCGGAGGCAGACTTTGTTCAAGAGGTCATTGACGTTCTTTAGAGGCTTGAATTTCATGAGAATGAGAGAACGGATTCAAACAAGTCGCCCCAGTTCTACACAGCTTCATCACATGATTTCAGAAAGAAGAAGGCGTGAAAAGCTCAACGAGAACTTTCAGAATCTTAGATCACTTCTTCCTCCAGGAACCAAGAAGGACAAAGCTTCGATACTTACAACAGCAAAGGAAGTACTGAGCTCATTAATGACGGAGATAAAAAAGCTTAGAGAGAGAAACAAGCAGCTGGAGGGAACAACAATAACAACATCTTCATCAGTGGCGGCGGCTATGAAAGAAACAAGTGGCGACGATGACCATGAAATCGTAAATGAAAGGTTAAATGTGAGAATTTCATCTTCAGGCGAACAACCACCAGAATCAAGCTCGTCCTTACAAGAAGGGAGAATGGTGGATTTGGAAGTGACGGTGAGGGGACCAAATTCTCAAGTGGATATTCTGATTCGATTACTGGGATTTCTGAAACAAGATCAAAGTCTAAGCTTGATTTCCATGGAAGCCAATACTCATATAGCTCATGCCACTTCCTTCAATCGAATCTCCATAAGGCTGAGAGTTGAGGTAAGTGAATGGGACGAGTCTGCCTTCCAGGAAGCAGTGAGAAGAGTTGTTGCTGACCTGGCACAGTGA 1593 0.4482 MDAVFSLPEAARAHFLQSILHSSGCSYICLWSYDSLLSNRLLCLDGLFNVRINQPSTSLGSSVAQRLFDQYRSLLFEVTDNDRIPGLAFKNRTYLELQQPDLLRLAWTPIQTQFYQEARIKTAVFMGCNNGEMELGFPNMSQDDIQTALRNWFPDEFSRLNQQQPNMDQSQNQNQNPPSSSSSSLRSLSLSAGSPEYSSLLLNIPSASSPHFPPPPPLAQVTAQSPFPPPDSENEAIMRAILHVLSTSTTSSSSPPSLPQNFPNPSNYMVHPEASAFKRYNPTGIIPPPRPPLSQMGPDHQLRRQTLFKRSLTFFRGLNFMRMRERIQTSRPSSTQLHHMISERRRREKLNENFQNLRSLLPPGTKKDKASILTTAKEVLSSLMTEIKKLRERNKQLEGTTITTSSSVAAAMKETSGDDDHEIVNERLNVRISSSGEQPPESSSSLQEGRMVDLEVTVRGPNSQVDILIRLLGFLKQDQSLSLISMEANTHIAHATSFNRISIRLRVEVSEWDESAFQEAVRRVVADLAQ 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g01272 530 Gene3D - 333 404 IPR036638 GO:0046983
Accr12g01272 530 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 331 400 IPR036638 GO:0046983
Accr12g01272 530 MobiDBLite consensus disorder prediction 208 233 - -
Accr12g01272 530 Coils Coil 373 400 - -
Accr12g01272 530 SMART finulus 340 389 IPR011598 GO:0046983
Accr12g01272 530 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 334 383 IPR011598 GO:0046983
Accr12g01272 530 MobiDBLite consensus disorder prediction 208 224 - -
Accr12g01272 530 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 108 527 IPR044658 -
Accr12g01272 530 CDD bHLH_AtbHLH_like 339 391 IPR045239 -
Accr12g01272 530 MobiDBLite consensus disorder prediction 164 191 - -
Accr12g01272 530 Pfam Helix-loop-helix DNA-binding domain 338 383 IPR011598 GO:0046983
Accr12g01272 530 Coils Coil 340 360 - -
Accr12g01272 530 MobiDBLite consensus disorder prediction 430 449 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g01272 Accr-Chr12 15479650 15484429 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g01272 1 530 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G56960 40.280 5.34e-90 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Accr12g01272 HLH 6.6e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g01272 - - gmx:100798452 480.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr12g01272 12 15479650 15484429 Accr12g01272 12 15479650 15484429 ECH