Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g01271 ATGTATAAGTTCACTGCTTCCTCTTACTTTTCAAGCTCCCTCTCACTTACCCAAAACAACCAGCCAATTCCTCTCTTTCTCTCTCTCTCTCATATATCCAGTCGTTTGCTGTGTTTGGATGGATTGTTCAATGTGAGAATCAACCAACCGAGCACCTCTTTGGGGAGCAGTGTCGCTCAAAGGCTTTTTGACCAATACAGGAGTTTGCTATTTGAAGTCACTGATAACGACCGTATTCCAGGACTGGCTTTCAAGAACCGCACTTACCTTGAGCTGCAGCAACCAGATCTTCTAAGATTAGCATGGACACCAATACAAACACAATTTTATCAGGAAGCAAGGATTAAGACTGCAGTCTTCATGGGGTGCAACAATGGAGAAATGGAACTTGGCTTTCCAAACATGTCTCAGGATGATATTCAAACAGCACTGAGGAATTGGTTCCCAGATGAATTTTCCAGATTAAATCAGCAGCAGCCAAATATGGATCAGAGTCAGAATCAGAACCAGAACCCACCATCATCATCTTCATCATCATTAAGATCACTCTCATTATCTGCAGGGAGCCCTGAATACTCATCCCTTCTCTTAAACATTCCTTCTGCATCTTCCCCTCATTTTCCTCCCCCTCCTCCTCTGGCTCAAGTCACCGCACAGAGCCCATTTCCTCCACCAGACTCCGAAAATGAAGCCATCATGAGAGCAATCCTTCATGTCCTTTCCACTAGTACTACTTCTTCTTCATCACCTCCTTCTCTTCCTCAGAATTTTCCTAATCCTAGTAATTATATGGTTCATCCTGAGGCTAGTGCCTTCAAGAGGTACAACCCCACCGGGATTATCCCGCCACCGCGGCCGCCATTATCTCAAATGGGACCGGATCATCAATTGCGGAGGCAGACTTTGTTCAAGAGGTCATTGACGTTCTTTAGAGGCTTGAATTTCATGAGAATGAGAGAACGGATTCAAACAAGTCGCCCCAGTTCTACACAGCTTCATCACATGATTTCAGAAAGAAGAAGGCGTGAAAAGCTCAACGAGAACTTTCAGAATCTTAGATCACTTCTTCCTCCAGGAACCAAGAAGGACAAAGCTTCGATACTTACAACAGCAAAGGAAGTACTGAGCTCATTAATGACGGAGATAAAAAAGCTTAGAGAGAGAAACAAGCAGCTGGAGGGAACAACAATAACAACATCTTCATCAGTGGCGGCGGCTATGAAAGAAACAAGTGGCGACGATGACCATGAAATCGTAAATGAAAGGTTAAATGTGAGAATTTCATCTTCAGGCGAACAACCACCAGAATCAAGCTCGTCCTTACAAGAAGGGAGAATGGTGGATTTGGAAGTGACGGTGAGGGGACCAAATTCTCAAGTGGATATTCTGATTCGATTACTGGGATTTCTGAAACAAGATCAAAGTCTAAGCTTGATTTCCATGGAAGCCAATACTCATATAGCTCATGCCACTTCCTTCAATCGAATCTCCATAAGGCTGAGAGTTGAGGTAAGTGAATGGGACGAGTCTGCCTTCCAGGAAGCAGTGAGAAGAGTTGTTGCTGACCTGGCACAGTGA 1578 0.4423 MYKFTASSYFSSSLSLTQNNQPIPLFLSLSHISSRLLCLDGLFNVRINQPSTSLGSSVAQRLFDQYRSLLFEVTDNDRIPGLAFKNRTYLELQQPDLLRLAWTPIQTQFYQEARIKTAVFMGCNNGEMELGFPNMSQDDIQTALRNWFPDEFSRLNQQQPNMDQSQNQNQNPPSSSSSSLRSLSLSAGSPEYSSLLLNIPSASSPHFPPPPPLAQVTAQSPFPPPDSENEAIMRAILHVLSTSTTSSSSPPSLPQNFPNPSNYMVHPEASAFKRYNPTGIIPPPRPPLSQMGPDHQLRRQTLFKRSLTFFRGLNFMRMRERIQTSRPSSTQLHHMISERRRREKLNENFQNLRSLLPPGTKKDKASILTTAKEVLSSLMTEIKKLRERNKQLEGTTITTSSSVAAAMKETSGDDDHEIVNERLNVRISSSGEQPPESSSSLQEGRMVDLEVTVRGPNSQVDILIRLLGFLKQDQSLSLISMEANTHIAHATSFNRISIRLRVEVSEWDESAFQEAVRRVVADLAQ 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g01271 525 Coils Coil 368 395 - -
Accr12g01271 525 CDD bHLH_AtbHLH_like 334 386 IPR045239 -
Accr12g01271 525 MobiDBLite consensus disorder prediction 159 186 - -
Accr12g01271 525 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 326 395 IPR036638 GO:0046983
Accr12g01271 525 MobiDBLite consensus disorder prediction 203 227 - -
Accr12g01271 525 SMART finulus 335 384 IPR011598 GO:0046983
Accr12g01271 525 Pfam Helix-loop-helix DNA-binding domain 333 378 IPR011598 GO:0046983
Accr12g01271 525 Coils Coil 335 355 - -
Accr12g01271 525 MobiDBLite consensus disorder prediction 203 219 - -
Accr12g01271 525 Gene3D - 328 399 IPR036638 GO:0046983
Accr12g01271 525 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 103 522 IPR044658 -
Accr12g01271 525 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 329 378 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g01271 Accr-Chr12 15479123 15484429 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g01271 33 525 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G56960 40.226 2.46e-80 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Accr12g01271 HLH 6.5e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g01271 - - gmx:100798452 429.869