Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g01257 ATGATACCAACTTATCCTTTCTCTCTTTCTTCTTCTTCTTCTAATTCTAATTCTACTATGCCTATTATAGATCTTAATATTGTTGATGATCATCAAAGCCATGAGCAAATTTTTAGCCCAACCCACCAACCTTCTTATTCTTCCTCTTCTCTATCATCATCATCATGCCCTATTCTCTTTAACCCCTCTCATCAGCTTCAGGATCACGCTGGATCTTCTTACTTGGAGTACAAGAACTTACAAAATGATCATGATGAGGCTTTTGGGAAGAATATTATTGGTTCAAGTGGTGGATCATGGAATGATCCGGATCAAGAAAAGGGTGGCGGTGGCGGTGTTGAGATCAGAAAGAGGGGTCTGAAACTGAAAGTTTGGAAGAGATCATCAGGAGCATCAGGATCATCAGAGAAGGAGGAGGATGAAGAAAATAATCATAATCATAATCAAAATGAGGATAATTATGATTCAATGAAGTGGATGCCTTCAAAGATGAGAATGATGAGGAAGATGATGGTGGCTTCATCAGATCATAATCATAATAATAATGATAAGGTTTCTTCTTCCTCCTCCTCCGAAGATCAGAATCAGAATCAGAATCAGTTTCGGAACCAGCATAGACCATTATTATTGTCTCCTAGAGGAAACGATAACAGTAGCAGCAGCAACAATTCTTCAACCCAAAGTAATACTAATAATAATAATATTACTGTTAGGGTTTGTGCTGATTGCCACACCACGAAGACCCCTCTTTGGAGAAGTGGACCAAGAGGTCCTAAGTCACTATGCAACGCCTGTGGGATTCGACAAAGGAAAGCGAGGCGAGCCATGGCGGCTGCGGCTGCGGCTGCTGCTGCTTCGAATGGTGGGTCGCCGGATCTGAAGGCGGCTGAGAAATCTGCGGTGAAAAGGTCTTACAATGTTCACAGCAGCAAAGAGAAGAAGTTGAAATTTGAACGTGAAACTACCCATCATCAGATCATGAAGAAGAAGCACAAGATTGAAGATGATGATGATCATCAAGACAAGGAAGCTAATAATAATAATTCAAGTGGGAAATCGCCTTCGTCGTCCCCATCAATAATAAACAAGTTTAGTAGTTTTGAGGATTTCACAGTAAGCTTGATGGGTAAGAACTTGGCAACTTCATCACAAGTTTTCCCTCAGGATGAGAAGGAGGCTGCAATTCTTCTTATGGCTTTATCTTGCAATGGCCTTGTCCATGGATGA 1227 0.4108 MIPTYPFSLSSSSSNSNSTMPIIDLNIVDDHQSHEQIFSPTHQPSYSSSSLSSSSCPILFNPSHQLQDHAGSSYLEYKNLQNDHDEAFGKNIIGSSGGSWNDPDQEKGGGGGVEIRKRGLKLKVWKRSSGASGSSEKEEDEENNHNHNQNEDNYDSMKWMPSKMRMMRKMMVASSDHNHNNNDKVSSSSSSEDQNQNQNQFRNQHRPLLLSPRGNDNSSSSNNSSTQSNTNNNNITVRVCADCHTTKTPLWRSGPRGPKSLCNACGIRQRKARRAMAAAAAAAAASNGGSPDLKAAEKSAVKRSYNVHSSKEKKLKFERETTHHQIMKKKHKIEDDDDHQDKEANNNNSSGKSPSSSPSIINKFSSFEDFTVSLMGKNLATSSQVFPQDEKEAAILLMALSCNGLVHG 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g01257 408 MobiDBLite consensus disorder prediction 304 358 - -
Accr12g01257 408 MobiDBLite consensus disorder prediction 132 152 - -
Accr12g01257 408 CDD ZnF_GATA 239 271 IPR000679 GO:0006355|GO:0043565
Accr12g01257 408 Pfam GATA zinc finger 240 273 IPR000679 GO:0006355|GO:0043565
Accr12g01257 408 MobiDBLite consensus disorder prediction 88 157 - -
Accr12g01257 408 MobiDBLite consensus disorder prediction 304 345 - -
Accr12g01257 408 Gene3D - 238 276 IPR013088 GO:0006355|GO:0008270
Accr12g01257 408 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 11 407 - -
Accr12g01257 408 SMART GATA_3 234 285 IPR000679 GO:0006355|GO:0043565
Accr12g01257 408 ProSitePatterns GATA-type zinc finger domain. 240 265 IPR000679 GO:0006355|GO:0043565
Accr12g01257 408 ProSiteProfiles GATA-type zinc finger domain profile. 238 270 IPR000679 GO:0006355|GO:0043565
Accr12g01257 408 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 236 274 - -
Accr12g01257 408 FunFam GATA transcription factor 21 233 337 - -
Accr12g01257 408 MobiDBLite consensus disorder prediction 175 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g01257 Accr-Chr12 15278790 15280487 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g01257 155 408 C2C2-Gata Transcription Factor Family AT4G26150 39.922 1.31e-33 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Accr12g01257 GATA 5.7e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g01257 - - pcin:129320693 321.242