Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g01250 ATGGAAGATGATGGGACGATATGCAACACAAGGCTGAGTCTAGGGCTTGGAATAGGAAGCTATGTGATGCCATTAAAGAAGCAGAAGTTTGAAGAAGCCATTATTAATAAAGAATTGATCAGTTTGAAGACCAGAATCGATGATGAAGAAGAAGAAGATGAAAAGAGCGATCATAGAAATAGTTGTAGAAAGAAACTGAGACTCACCAAGGAACAATCCGCCATGCTTGAAGATAGCTTTAAGCTCCATAGCTCTCTCAATCCAGTCCAGAAACAAGAACTTGCTGAGCGATTGAATCTGAAGCCCAGACAGATCGAAGTTTGGTTTCAAAACAGAAGAGCGAGGAAAAAGTTGAAGCAAACGGAATTAGACTGCGAGTTGCTGAGAAAATGCTGCGAAAACCTAAGAAAGGAGAACAGAATGTTGAAGAAGGAAGTAGAAGAACTACGCGGCGGCCTGAAAGTTGAAGCGCCATCGTCCTCTTCGTCGTCGTTAATACTAGGAAGCGGCAATAACAGTATTCAACTGTCTAGAGCAGCACCCACACTGGCTCTATGTTCCTCTTGTGAGAAGCCATTAATCAAAGGCCATTGA 594 0.4259 MEDDGTICNTRLSLGLGIGSYVMPLKKQKFEEAIINKELISLKTRIDDEEEEDEKSDHRNSCRKKLRLTKEQSAMLEDSFKLHSSLNPVQKQELAERLNLKPRQIEVWFQNRRARKKLKQTELDCELLRKCCENLRKENRMLKKEVEELRGGLKVEAPSSSSSSLILGSGNNSIQLSRAAPTLALCSSCEKPLIKGH 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g01250 197 Coils Coil 118 152 - -
Accr12g01250 197 Pfam Homeobox associated leucine zipper 119 152 IPR003106 GO:0006355|GO:0043565
Accr12g01250 197 ProSiteProfiles 'Homeobox' domain profile. 59 119 IPR001356 GO:0003677
Accr12g01250 197 ProSitePatterns 'Homeobox' domain signature. 94 117 IPR017970 GO:0000981|GO:0006355
Accr12g01250 197 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 45 191 - -
Accr12g01250 197 SMART halz 119 163 IPR003106 GO:0006355|GO:0043565
Accr12g01250 197 CDD homeodomain 63 120 IPR001356 GO:0003677
Accr12g01250 197 SMART HOX_1 61 123 IPR001356 GO:0003677
Accr12g01250 197 Gene3D - 68 115 - -
Accr12g01250 197 Pfam Homeodomain 63 117 IPR001356 GO:0003677
Accr12g01250 197 Coils Coil 32 52 - -
Accr12g01250 197 SUPERFAMILY Homeodomain-like 56 120 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g01250 Accr-Chr12 15157831 15159312 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g01250 44 191 Homeobox Transcription Factor Family AT4G37790 53.378 1.93e-46 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Accr12g01250 Homeodomain 2.7e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g01250 K09338 - pcin:129307836 189.504