Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g01234 ATGAGTTACTTCAAGGGTTCACCTCGCCGTCAAAACGACGTAGAGGCGGGCAATAATCGCTCCGGAGACTATGATGACGGAGAGGGTTCCTCCTCTCCGTTTGACATTTCCCGTACTAAAAATGCTTCCATTGAACGGCTCAGGCGGTGGAGGCAAGCTGCGCTTGTACTTAATGCTTCTCGTCGATTCCGTTATACCTTGGACCTGAAAAAAGAGGAGGAGAAGCAGCAAACATTGAGGAAGATTCGGGCGCATGCACAAGCCATTAGGGCTGCATATCTTTTCAAAAAAGCTGCTGTGCCACCTGTGAGTGGGAGTCCGGCACCACCTCCAGCTGCTCCTGGGGACTTCCCAATTGGGCAAGAGCAGCTTGCTTCAATTTCAAGGGATCATAACAGTGATGTCCTGCAGCAATTTGGAGGGGTTAGAGGGCTTGCAGAATCGTTGAAAACCAATTTAGAGAAGGGGATTCATGGTGATGATGGTGACTTAATGAAGCGGAGGAATGCCTATGGGTCAAACAATTATCCTCGGAAGAAGCCCAGGAGTTTTTTGATGTTTGTGTGGGATGCTTGCAAGGATCTCACCCTGGTTATATTAATGGTCGCAGCGGTGGCTTCATTGGCCCTAGGAATAAAATCTGAGGGTATCAAGGAAGGATGGTATGATGGAGGGAGCATTGCATTTGCAGTTATTCTTGTTATTGTTGTTACAGCTGTAAGTGATTATAAGCAGTCTCTTCAGTTTCGTGATTTAAATGAGGAGAAGAGAAATATACAACTAGAGGTTGTAAGAAATGGTAGAAGAGTTGAGATCTCAATCTATGATATAGTTGTCGGTGATGTTGTACCTCTGAATATTGGTGACCAGGTCCCTGCTGATGGAATTTTGATCACTGGGCACTCTCTAGCAATTGATGAATCAAGTATGACTGGCGAGAGCAAGACTGTTCACAAGGACTCGAAGGATCCCTTTTTGATGTCTGGATGTAAAGTTGCTGATGGCAGTGGCACTATGCTGGTTACAGGTGTTGGTATTAATACTGAGTGGGGGCTTTTGATGGCTAGTATATCTGAGGACACTGGTGAAGAAACACCCTTGCAGGTACGCTTAAATGGTGTCGCCACCTTCATTGGTATCGTTGGACTAACTGTGGCTGGTGTTGTTTTGGTTGTGCTACTGGTCAGATATTTTACTGGGCATACTGAAAACTCTGAAGGAAGACCTCAGTTTAGTGCGGGTCATACGAAACTGGGTACTGCTATTAATGGAGCAGTCAAGATAATCACAGTTGCCGTCACCATTGTAGTGGTTGCTGTACCTGAAGGGCTTCCTTTAGCAGTTACCTTAACACTTGCCTACTCAATGAGAAAAATGATGGCAGATAAAGCTTTGGTGAGGAGGCTTTCGGCCTGTGAGACAATGGGTTCTGCCACAACCATTTGCAGTGATAAGACTGGAACATTGACTTTGAATAAGATGACTGTGACTGAAGCTTATATTGGGGGGAAGAAGACTGATCCTCCTCACAACAAATCTGAGCTCTCTGATATGTACCGCTCTTTACTTGTTGAAGGCATTGCACAAAACACCAATGGCAGTGTTTATGTGCCTGAGGGTGGTAACAATGTTGAGGTCTCTGGATCACCGACAGAAAAGGCAATTTTGAACTGGGGAATTCACCTGGGGATGAATTTTGAGGCTGACAGATCAGAGTCATCAATTATACATGTCTTTCCATTCAATTCGGAGAAAAAACGTGGGGGTGTCGCAGTGAGGAAGCCTGACTCTCAAGTTCATATACATTGGAAAGGTGCTGCTGAGATAGTATTGTCCTGTTGTACAGCATATTTGGATGCAGAGAACCAGTCAGTAGAGATGGATGAAGAGAAGATGACATATTTTCAAAAAGCAATTGAAGACATGGCTGCTGAAAGCCTTCGCTGTGTTGCCATTGCATATAGATCTTATGAAATAGAGAAGGTTCCAACTACTGAAGAAGAACTTGCTCGCTGGTCATTACCTGAGGATGATCTTGTTTTATTAGCTATTGTTGGTCTGAAGGATCCTTGTCGACCTGGTGTCAAGGATGCAGTGCAACTTTGCCAAAAAGCTGGAGTGAAGGTGCGAATGGTCACCGGGGACAATGTACAAACTGCAAAAGCAATTGCTTTGGAATGTGGAATACTCGCTTCATCTGCAGATGCCAGGGAGCCAAACATTATTGAAGGCAAAAGATTTCGGGAGTTATCAGACTCAGAGCGAGAGGAAATTGCAGAAAGTATATCGGTTATGGGGCGGTCTTCTCCTAATGACAAGCTTTTGCTCGTGCAAGTCTTGAGAAAGAAGGGGCACGTTGTTGCTGTAACTGGGGATGGAACTAATGATGCTCCTGCACTGCATGAGGCTGATATAGGTCTTGCAATGGGTATCCAAGGGACAGAAGTTGCTAAAGAGAGCTCTGATATCATAATTTTGGATGACAATTTTGCTTCAGTTGTGAAGGTTGTTAGATGGGGGCGGTCTGTATATGCAAATATCCAGAAATTTATCCAGTTTCAACTTACAGTAAATGTGGCAGCTCTTGTAATTAACGTTGTTGCTGCCATTTCTTCTGGTGATGTCCCACTGAATACAGTCCAGCTTCTCTGGGTAAATCTGATTATGGATACACTTGGGGCACTAGCCTTGGCAACAGAACCACCAACTGATCACCTAATGGATCGATCTCCTGTCGGCAGAAGGGAACCTCTCATAACAAATATCATGTGGAGGAATTTGCTCATACAAGCAATGTACCAAATAGCTGTTTTGCTTGTACTCAATTTCCGAGGAAGGAGCATATTGGGTCTAAAGCATAAAGAGTTCACCCATTCTATTAAAGTGAAGAACACTCTAATATTTAATGCTTTTGTGTTCTGTCAAATCTTTAATGAATTCAATGCTCGAAAGCCAGATGAGTACAACATTTTCAAGGGAGTCACAAGAAACTACCTCTTTATGGGGATTGTGGGAATAACTCTTCTACTTCAGATTATCATCATTGAATTTCTGGGAAAATTCACCTCGACAGTCAGGCTTAATTGGAAGATGTGGATCATTTCCGTCGTCATTGGATTAATCAGCTGGCCTCTTGCTGTGGTTGGGAAGTTGATACCTTTGCCTGAAACCCCCTTTCCTGAGATTTTCATGAGATGTTTTCGGCGACGACAACTATGA 3219 0.4399 MSYFKGSPRRQNDVEAGNNRSGDYDDGEGSSSPFDISRTKNASIERLRRWRQAALVLNASRRFRYTLDLKKEEEKQQTLRKIRAHAQAIRAAYLFKKAAVPPVSGSPAPPPAAPGDFPIGQEQLASISRDHNSDVLQQFGGVRGLAESLKTNLEKGIHGDDGDLMKRRNAYGSNNYPRKKPRSFLMFVWDACKDLTLVILMVAAVASLALGIKSEGIKEGWYDGGSIAFAVILVIVVTAVSDYKQSLQFRDLNEEKRNIQLEVVRNGRRVEISIYDIVVGDVVPLNIGDQVPADGILITGHSLAIDESSMTGESKTVHKDSKDPFLMSGCKVADGSGTMLVTGVGINTEWGLLMASISEDTGEETPLQVRLNGVATFIGIVGLTVAGVVLVVLLVRYFTGHTENSEGRPQFSAGHTKLGTAINGAVKIITVAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTLNKMTVTEAYIGGKKTDPPHNKSELSDMYRSLLVEGIAQNTNGSVYVPEGGNNVEVSGSPTEKAILNWGIHLGMNFEADRSESSIIHVFPFNSEKKRGGVAVRKPDSQVHIHWKGAAEIVLSCCTAYLDAENQSVEMDEEKMTYFQKAIEDMAAESLRCVAIAYRSYEIEKVPTTEEELARWSLPEDDLVLLAIVGLKDPCRPGVKDAVQLCQKAGVKVRMVTGDNVQTAKAIALECGILASSADAREPNIIEGKRFRELSDSEREEIAESISVMGRSSPNDKLLLVQVLRKKGHVVAVTGDGTNDAPALHEADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINVVAAISSGDVPLNTVQLLWVNLIMDTLGALALATEPPTDHLMDRSPVGRREPLITNIMWRNLLIQAMYQIAVLLVLNFRGRSILGLKHKEFTHSIKVKNTLIFNAFVFCQIFNEFNARKPDEYNIFKGVTRNYLFMGIVGITLLLQIIIIEFLGKFTSTVRLNWKMWIISVVIGLISWPLAVVGKLIPLPETPFPEIFMRCFRRRQL 1072
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g01234 1072 PANTHER CATION TRANSPORTING ATPASE 83 1054 - -
Accr12g01234 1072 Gene3D - 492 690 IPR023299 GO:0000166
Accr12g01234 1072 Gene3D - 42 97 - -
Accr12g01234 1072 SFLD C1.7: P-type atpase like 464 842 - -
Accr12g01234 1072 PRINTS Sodium/potassium-transporting ATPase signature 862 883 - -
Accr12g01234 1072 PRINTS Sodium/potassium-transporting ATPase signature 601 619 - -
Accr12g01234 1072 PRINTS Sodium/potassium-transporting ATPase signature 475 496 - -
Accr12g01234 1072 PRINTS Sodium/potassium-transporting ATPase signature 225 245 - -
Accr12g01234 1072 PRINTS P-type cation-transporting ATPase superfamily signature 482 496 - -
Accr12g01234 1072 PRINTS P-type cation-transporting ATPase superfamily signature 790 809 - -
Accr12g01234 1072 PRINTS P-type cation-transporting ATPase superfamily signature 705 715 - -
Accr12g01234 1072 PRINTS P-type cation-transporting ATPase superfamily signature 814 826 - -
Accr12g01234 1072 PRINTS P-type cation-transporting ATPase superfamily signature 683 694 - -
Accr12g01234 1072 PRINTS P-type cation-transporting ATPase superfamily signature 306 320 - -
Accr12g01234 1072 SUPERFAMILY Calcium ATPase, transduction domain A 260 355 IPR008250 -
Accr12g01234 1072 Pfam E1-E2 ATPase 260 460 - -
Accr12g01234 1072 NCBIfam HAD-IC family P-type ATPase 227 386 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Accr12g01234 1072 NCBIfam HAD-IC family P-type ATPase 756 870 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Accr12g01234 1072 NCBIfam HAD-IC family P-type ATPase 422 508 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Accr12g01234 1072 Gene3D - 479 835 IPR023214 -
Accr12g01234 1072 FunFam Calcium-transporting ATPase 238 358 - -
Accr12g01234 1072 SUPERFAMILY HAD-like 480 895 IPR036412 -
Accr12g01234 1072 Gene3D - 165 358 - -
Accr12g01234 1072 SMART Cation_ATPase_N_a_2 138 212 IPR004014 -
Accr12g01234 1072 Pfam haloacid dehalogenase-like hydrolase 479 804 - -
Accr12g01234 1072 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 489 687 IPR023299 GO:0000166
Accr12g01234 1072 FunFam Calcium-transporting ATPase 492 690 - -
Accr12g01234 1072 Pfam Cation transporting ATPase, C-terminus 875 1052 IPR006068 -
Accr12g01234 1072 MobiDBLite consensus disorder prediction 1 37 - -
Accr12g01234 1072 FunFam Calcium-transporting ATPase 9 plasma membrane-type 336 506 - -
Accr12g01234 1072 SUPERFAMILY Calcium ATPase, transmembrane domain M 140 1053 IPR023298 -
Accr12g01234 1072 Gene3D - 190 1043 - -
Accr12g01234 1072 CDD P-type_ATPase_Ca_PMCA-like 166 923 - -
Accr12g01234 1072 FunFam Calcium-transporting ATPase 684 835 - -
Accr12g01234 1072 FunFam Calcium-transporting ATPase 190 247 - -
Accr12g01234 1072 SFLD p-type atpase 464 842 IPR044492 -
Accr12g01234 1072 FunFam Calcium-transporting ATPase 807 1056 - -
Accr12g01234 1072 Pfam Ca2+-ATPase N terminal autoinhibitory domain 32 74 IPR024750 GO:0005516
Accr12g01234 1072 ProSitePatterns E1-E2 ATPases phosphorylation site. 484 490 IPR018303 -
Accr12g01234 1072 FunFam Calcium-transporting ATPase 42 98 - -
Accr12g01234 1072 NCBIfam calcium-translocating P-type ATPase, PMCA-type 132 1053 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Accr12g01234 1072 Pfam Cation transporter/ATPase, N-terminus 141 207 IPR004014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g01234 Accr-Chr12 14588568 14615515 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g01234 4 1071 Primary Pumps ATPases AT4G29900 75.000 0.0 1619
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g01234 K01537 - gmx:100792945 1707.58