Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g01233 ATGAGTTACTTCAAGGGTTCACCTCGCCGTCAAAACGACGTAGAGGCGGGCAATAATCGCTCCGGAGACTATGATGACGGAGAGGGTTCCTCCTCTCCGTTTGACATTTCCCGTACTAAAAATGCTTCCATTGAACGGCTCAGGCGGTGGAGGCAAGCTGCGCTTGTACTTAATGCTTCTCGTCGATTCCGTTATACCTTGGACCTGAAAAAAGAGGAGGAGAAGCAGCAAACATTGAGGAAGATTCGGGCGCATGCACAAGCCATTAGGGCTGCATATCTTTTCAAAAAAGCTGCTGTGCCACCTGTGAGTGTTTCAGGGAGTCCGGCACCACCTCCAGCTGCTCCTGGGGACTTCCCAATTGGGCAAGAGCAGCTTGCTTCAATTTCAAGGGATCATAACAGTGATGTCCTGCAGCAATTTGGAGGGGTTAGAGGGCTTGCAGAATCGTTGAAAACCAATTTAGAGAAGGGGATTCATGGTGATGATGGTGACTTAATGAAGCGGAGGAATGCCTATGGGTCAAACAATTATCCTCGGAAGAAGCCCAGGAGTTTTTTGATGTTTGTGTGGGATGCTTGCAAGGATCTCACCCTGGTTATATTAATGGTCGCAGCGGTGGCTTCATTGGCCCTAGGAATAAAATCTGAGGGTATCAAGGAAGGATGGTATGATGGAGGGAGCATTGCATTTGCAGTTATTCTTGTTATTGTTGTTACAGCTGTAAGTGATTATAAGCAGTCTCTTCAGTTTCGTGATTTAAATGAGGAGAAGAGAAATATACAACTAGAGGTTGTAAGAAATGGTAGAAGAGTTGAGATCTCAATCTATGATATAGTTGTCGGTGATGTTGTACCTCTGAATATTGGTGACCAGGTCCCTGCTGATGGAATTTTGATCACTGGGCACTCTCTAGCAATTGATGAATCAAGTATGACTGGCGAGAGCAAGACTGTTCACAAGGACTCGAAGGATCCCTTTTTGATGTCTGGATGTAAAGTTGCTGATGGCAGTGGCACTATGCTGGTTACAGGTGTTGGTATTAATACTGAGTGGGGGCTTTTGATGGCTAGTATATCTGAGGACACTGGTGAAGAAACACCCTTGCAGGTACGCTTAAATGGTGTCGCCACCTTCATTGGTATCGTTGGACTAACTGTGGCTGGTGTTGTTTTGGTTGTGCTACTGGTCAGATATTTTACTGGGCATACTGAAAACTCTGAAGGAAGACCTCAGTTTAGTGCGGGTCATACGAAACTGGGTACTGCTATTAATGGAGCAGTCAAGATAATCACAGTTGCCGTCACCATTGTAGTGGTTGCTGTACCTGAAGGGCTTCCTTTAGCAGTTACCTTAACACTTGCCTACTCAATGAGAAAAATGATGGCAGATAAAGCTTTGGTGAGGAGGCTTTCGGCCTGTGAGACAATGGGTTCTGCCACAACCATTTGCAGTGATAAGACTGGAACATTGACTTTGAATAAGATGACTGTGACTGAAGCTTATATTGGGGGGAAGAAGACTGATCCTCCTCACAACAAATCTGAGCTCTCTGATATGTACCGCTCTTTACTTGTTGAAGGCATTGCACAAAACACCAATGGCAGTGTTTATGTGCCTGAGGGTGGTAACAATGTTGAGGTCTCTGGATCACCGACAGAAAAGGCAATTTTGAACTGGGGAATTCACCTGGGGATGAATTTTGAGGCTGACAGATCAGAGTCATCAATTATACATGTCTTTCCATTCAATTCGGAGAAAAAACGTGGGGGTGTCGCAGTGAGGAAGCCTGACTCTCAAGTTCATATACATTGGAAAGGTGCTGCTGAGATAGTATTGTCCTGTTGTACAGCATATTTGGATGCAGAGAACCAGTCAGTAGAGATGGATGAAGAGAAGATGACATATTTTCAAAAAGCAATTGAAGACATGGCTGCTGAAAGCCTTCGCTGTGTTGCCATTGCATATAGATCTTATGAAATAGAGAAGGTTCCAACTACTGAAGAAGAACTTGCTCGCTGGTCATTACCTGAGGATGATCTTGTTTTATTAGCTATTGTTGGTCTGAAGGATCCTTGTCGACCTGGTGTCAAGGATGCAGTGCAACTTTGCCAAAAAGCTGGAGTGAAGGTGCGAATGGTCACCGGGGACAATGTACAAACTGCAAAAGCAATTGCTTTGGAATGTGGAATACTCGCTTCATCTGCAGATGCCAGGGAGCCAAACATTATTGAAGGCAAAAGATTTCGGGAGTTATCAGACTCAGAGCGAGAGGAAATTGCAGAAAGTATATCGGTTATGGGGCGGTCTTCTCCTAATGACAAGCTTTTGCTCGTGCAAGTCTTGAGAAAGAAGGGGCACGTTGTTGCTGTAACTGGGGATGGAACTAATGATGCTCCTGCACTGCATGAGGCTGATATAGGTCTTGCAATGGGTATCCAAGGGACAGAAGTTGCTAAAGAGAGCTCTGATATCATAATTTTGGATGACAATTTTGCTTCAGTTGTGAAGGTTGTTAGATGGGGGCGGTCTGTATATGCAAATATCCAGAAATTTATCCAGTTTCAACTTACAGTAAATGTGGCAGCTCTTGTAATTAACGTTGTTGCTGCCATTTCTTCTGGTGATGTCCCACTGAATACAGTCCAGCTTCTCTGGGTAAATCTGATTATGGATACACTTGGGGCACTAGCCTTGGCAACAGAACCACCAACTGATCACCTAATGGATCGATCTCCTGTCGGCAGAAGGGAACCTCTCATAACAAATATCATGTGGAGGAATTTGCTCATACAAGCAATGTACCAAATAGCTGTTTTGCTTGTACTCAATTTCCGAGGAAGGAGCATATTGGGTCTAAAGCATAAAGAGTTCACCCATTCTATTAAAGTGAAGAACACTCTAATATTTAATGCTTTTGTGTTCTGTCAAATCTTTAATGAATTCAATGCTCGAAAGCCAGATGAGTACAACATTTTCAAGGGAGTCACAAGAAACTACCTCTTTATGGGGATTGTGGGAATAACTCTTCTACTTCAGATTATCATCATTGAATTTCTGGGAAAATTCACCTCGACAGTCAGGCTTAATTGGAAGATGTGGATCATTTCCGTCGTCATTGGATTAATCAGCTGGCCTCTTGCTGTGGTTGGGAAGTTGATACCTTTGCCTGAAACCCCCTTTCCTGAGATTTTCATGAGATGTTTTCGGCGACGACAACTATGA 3225 0.4397 MSYFKGSPRRQNDVEAGNNRSGDYDDGEGSSSPFDISRTKNASIERLRRWRQAALVLNASRRFRYTLDLKKEEEKQQTLRKIRAHAQAIRAAYLFKKAAVPPVSVSGSPAPPPAAPGDFPIGQEQLASISRDHNSDVLQQFGGVRGLAESLKTNLEKGIHGDDGDLMKRRNAYGSNNYPRKKPRSFLMFVWDACKDLTLVILMVAAVASLALGIKSEGIKEGWYDGGSIAFAVILVIVVTAVSDYKQSLQFRDLNEEKRNIQLEVVRNGRRVEISIYDIVVGDVVPLNIGDQVPADGILITGHSLAIDESSMTGESKTVHKDSKDPFLMSGCKVADGSGTMLVTGVGINTEWGLLMASISEDTGEETPLQVRLNGVATFIGIVGLTVAGVVLVVLLVRYFTGHTENSEGRPQFSAGHTKLGTAINGAVKIITVAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTLNKMTVTEAYIGGKKTDPPHNKSELSDMYRSLLVEGIAQNTNGSVYVPEGGNNVEVSGSPTEKAILNWGIHLGMNFEADRSESSIIHVFPFNSEKKRGGVAVRKPDSQVHIHWKGAAEIVLSCCTAYLDAENQSVEMDEEKMTYFQKAIEDMAAESLRCVAIAYRSYEIEKVPTTEEELARWSLPEDDLVLLAIVGLKDPCRPGVKDAVQLCQKAGVKVRMVTGDNVQTAKAIALECGILASSADAREPNIIEGKRFRELSDSEREEIAESISVMGRSSPNDKLLLVQVLRKKGHVVAVTGDGTNDAPALHEADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINVVAAISSGDVPLNTVQLLWVNLIMDTLGALALATEPPTDHLMDRSPVGRREPLITNIMWRNLLIQAMYQIAVLLVLNFRGRSILGLKHKEFTHSIKVKNTLIFNAFVFCQIFNEFNARKPDEYNIFKGVTRNYLFMGIVGITLLLQIIIIEFLGKFTSTVRLNWKMWIISVVIGLISWPLAVVGKLIPLPETPFPEIFMRCFRRRQL 1074
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g01233 1074 SFLD p-type atpase 466 844 IPR044492 -
Accr12g01233 1074 Pfam Cation transporting ATPase, C-terminus 877 1054 IPR006068 -
Accr12g01233 1074 NCBIfam calcium-translocating P-type ATPase, PMCA-type 134 1055 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Accr12g01233 1074 SUPERFAMILY Calcium ATPase, transmembrane domain M 142 1055 IPR023298 -
Accr12g01233 1074 PRINTS P-type cation-transporting ATPase superfamily signature 308 322 - -
Accr12g01233 1074 PRINTS P-type cation-transporting ATPase superfamily signature 707 717 - -
Accr12g01233 1074 PRINTS P-type cation-transporting ATPase superfamily signature 484 498 - -
Accr12g01233 1074 PRINTS P-type cation-transporting ATPase superfamily signature 792 811 - -
Accr12g01233 1074 PRINTS P-type cation-transporting ATPase superfamily signature 816 828 - -
Accr12g01233 1074 PRINTS P-type cation-transporting ATPase superfamily signature 685 696 - -
Accr12g01233 1074 FunFam Calcium-transporting ATPase 9 plasma membrane-type 338 508 - -
Accr12g01233 1074 Gene3D - 42 97 - -
Accr12g01233 1074 FunFam Calcium-transporting ATPase 192 249 - -
Accr12g01233 1074 FunFam Calcium-transporting ATPase 240 360 - -
Accr12g01233 1074 SUPERFAMILY Calcium ATPase, transduction domain A 262 357 IPR008250 -
Accr12g01233 1074 FunFam Calcium-transporting ATPase 686 837 - -
Accr12g01233 1074 SFLD Haloacid Dehalogenase 466 844 - -
Accr12g01233 1074 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 491 689 IPR023299 GO:0000166
Accr12g01233 1074 SUPERFAMILY HAD-like 482 897 IPR036412 -
Accr12g01233 1074 Gene3D - 167 360 - -
Accr12g01233 1074 Pfam haloacid dehalogenase-like hydrolase 481 806 - -
Accr12g01233 1074 Pfam E1-E2 ATPase 262 462 - -
Accr12g01233 1074 Pfam Cation transporter/ATPase, N-terminus 143 209 IPR004014 -
Accr12g01233 1074 MobiDBLite consensus disorder prediction 1 37 - -
Accr12g01233 1074 PANTHER CATION TRANSPORTING ATPASE 83 1056 - -
Accr12g01233 1074 FunFam Calcium-transporting ATPase 809 1058 - -
Accr12g01233 1074 FunFam Calcium-transporting ATPase 494 692 - -
Accr12g01233 1074 Gene3D - 481 837 IPR023214 -
Accr12g01233 1074 Gene3D - 192 1045 - -
Accr12g01233 1074 Gene3D - 494 692 IPR023299 GO:0000166
Accr12g01233 1074 ProSitePatterns E1-E2 ATPases phosphorylation site. 486 492 IPR018303 -
Accr12g01233 1074 Pfam Ca2+-ATPase N terminal autoinhibitory domain 32 74 IPR024750 GO:0005516
Accr12g01233 1074 NCBIfam HAD-IC family P-type ATPase 758 872 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Accr12g01233 1074 NCBIfam HAD-IC family P-type ATPase 229 388 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Accr12g01233 1074 NCBIfam HAD-IC family P-type ATPase 424 511 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Accr12g01233 1074 FunFam Calcium-transporting ATPase 42 98 - -
Accr12g01233 1074 PRINTS Sodium/potassium-transporting ATPase signature 864 885 - -
Accr12g01233 1074 PRINTS Sodium/potassium-transporting ATPase signature 603 621 - -
Accr12g01233 1074 PRINTS Sodium/potassium-transporting ATPase signature 227 247 - -
Accr12g01233 1074 PRINTS Sodium/potassium-transporting ATPase signature 477 498 - -
Accr12g01233 1074 CDD P-type_ATPase_Ca_PMCA-like 168 925 - -
Accr12g01233 1074 SMART Cation_ATPase_N_a_2 140 214 IPR004014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g01233 Accr-Chr12 14588568 14615515 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g01233 4 1073 Primary Pumps ATPases AT4G29900 74.907 0.0 1620
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g01233 K01537 - gmx:100792945 1705.65