Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g01221 ATGGAGAATCTTCCCGACGAATTCAAGCATTACTGGGAGACGCACATGTTCTACCAAACTGAAGAGCTCGACAGCTGGGGATTGGACGAGGCAATCTCCGGCTACTACGATTCGAGCTCACCGGACGGCAACGCTTTTTCGTCGACGGCTTCCAAGAACATCGTCTCGGAGAGGAATCGCCGGAAGAAGCTCAACGAACGCCTCTTCGCTCTCAGAGCAGTGGTTCCCAATATTAGCAAGATGGATAAGGCATCGATATTAAAGGATGCGATTGAGTACATTCAAAACTTGCACGAACAAGAGAAGAGCATAGAAGCAGAGATAATGGAGCTTGAATCTGGCAAGAACATGAACATGAACATGATGATGATGAGCAACAGTGGTGAGAATCAGAATCAGAATTCAAGTTTTGAATATGAACATCAAGACCTGCCTGTGCTTCTCAGGTCCAAGAGGAACAAGACTCAGCAGCAGCTTTTTGAGTCCGTCAGCTCCAGAAATTCCCCCATTGAAGTCCATGAGCTAAGAGTGACTTACATGGGAGAGAAGACAGTGGTGGTGAGCCTGACGTGCAGCAAGAGGACAGACACAATGGTAAAGCTATGTGAAGCGTTTGAATCATTGAAGCTAAAGATCATCACAGCCAACATCACTTGCTTCTCTGGCACTCTCCTCAAGACCCTCTTCATTCAGGCGGATGAAGAAGAGAAAGATGTTGTACAGATAAAGATCCAAGCAGCCATTGCAGCTCTCAATGATCCTGAAAGCCCAATGAGCATGTAA 783 0.4662 MENLPDEFKHYWETHMFYQTEELDSWGLDEAISGYYDSSSPDGNAFSSTASKNIVSERNRRKKLNERLFALRAVVPNISKMDKASILKDAIEYIQNLHEQEKSIEAEIMELESGKNMNMNMMMMSNSGENQNQNSSFEYEHQDLPVLLRSKRNKTQQQLFESVSSRNSPIEVHELRVTYMGEKTVVVSLTCSKRTDTMVKLCEAFESLKLKIITANITCFSGTLLKTLFIQADEEEKDVVQIKIQAAIAALNDPESPMSM 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g01221 260 Gene3D - 47 114 IPR036638 GO:0046983
Accr12g01221 260 SMART finulus 54 103 IPR011598 GO:0046983
Accr12g01221 260 Pfam Helix-loop-helix DNA-binding domain 55 97 IPR011598 GO:0046983
Accr12g01221 260 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 51 113 IPR036638 GO:0046983
Accr12g01221 260 Coils Coil 87 114 - -
Accr12g01221 260 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 48 97 IPR011598 GO:0046983
Accr12g01221 260 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 44 246 - -
Accr12g01221 260 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 44 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g01221 Accr-Chr12 14333189 14339988 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g01221 1 231 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G57150 57.692 5.64e-79 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Accr12g01221 HLH 2.8e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g01221 - - gmx:100817978 363.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr12g01221 12 14333189 14339988 Accr12g01221 12 14333189 14339988 ECH