Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g01214 ATGCGGGATAGTGAGAAGAATGTAAATAGCAGAGGATCTAGAACATACAAGAATTCAAATGCGCAAACTGAGTTAAAGCCATGCTCATCATTGAGATTGAAAACCAGTAGCCCGAAATCCCAAGTGAAAAAGCATAAATCAAAATCTCATGCACACAGAGTTGGTGCAAATAAATCAAGGAAGGCAGTCACTGACTCTTCTAAGGAGGATCCAAGCAAGGACTTTTCAAATAAAAACTTGATCATTAGAAAATGTCTACATAAAACCAATGGAGATCCATCACAGAAGCCCAGCACATCAAAGCCTCCAGGTGAAAATGTTTCTCTTGGCTCTGAGAAAGAGGGTAAAGATGTTGATGGGGAAGTATATATTCAGAAGCTTAAAAGGAGAAGGAGAAAAAAGAAAAGGCAAAGAAATAATGTGGATCTTGATGATGCTTCACGCCTGCAGAGGAGGCTAAGGTATCTTCTGATTAAAATAAAGCGGGAGCAGAACCTTATTGATGCTTATTCTGGAGAAGGTTGGAAGGGTCAGAGTCAGGAGAAGATCAGGCCAGAAAAGGAGTTGCTAAGAGCTCGGAAGCAGATTTTACAATGTAAGCTTAGTATTCGTGATGCCATTCACCAGTTGGATACTCTTAGTTCGGTGGGTAGCATTGAGGGCTCTGTCATTGCTCCAGATGGATCTGTTTACCACGAACATATATTCTGTGCAAAGTGCAAATTGCGTGAAGCTTTCCCTGATAATGATATTATACTATGTGATGGCACCTGTAACCGAGCTTTTCACCAAAAATGTCTTGATCCTCCATTGGACACCGAAAATATTCCTCCTGGAGATCAGGGCTGGTTTTGCAAGTTTTGTGAATGTAAGATGGAAATACTAGAGTCAATAAATGCGCATCTTGGGACTCATTTCTCCCTAGACAGCACTTGGCAGGATGTATTCAAGGAAGAAGCTTCCATCCCTGATGGCGATACTGGTTTACTGAATCCAGAAGAAGAATGGCCATCAGATGAATCTGATGATGATGATTATAATCCTGAAAGGAGAGAGGATAGCCACAATATCAGTGCTGAGGATATTGATGGTGATGCATCTGATGATTCTGGCAGTTCTACCAGCCTATGGAATTCAGATGATGGATATTCTCCAGGAATAGGAAAGGAAAGCAATGACCCTGAATTTTTCTCTGTGAATAGTTGCATAGATTCTGATGAATCGGAAGAGATAGCATGTGGCCGGAGGCAGCGAAAAGCAGTTGACTACAAGAAACTCTATGATGAAATGTTTGGGAAAGATGCTCCTGCACTTGAACAAGTTAGTGAAGATGAAGACTGGGGTCCAGGCAGAAAAAAGCGAAGAGAAAAAGAATCTGACGCTGCTAATACTCTAATGACTCTCCATGAAAGTGAGAACAAATCTTCCAATAATGAGCAGAATGTGATGACGGAATTTTCTTCAGACTTACAAAGTAAAAGGCCTTGTTTCAGGCTTCCACGCCATGCAGTTGAGAAGCTTCGCCAGGCTTTTTCAGAGAATGAGCTTCCTTCAAGATCCGTGAAGGAGAGTCTTTCGAAAGAGTTGGGACTAGATGCTGATAAGGTTAGCAAATGGTTCAAAAATGCTCGTTACTTGGCTCTAAGAGCCAGAAAGCAAGCAGAAGGAGCAGAAGAACAGACTCGAAGCATCACTTCTAGAAGCCCAAAAGATTCTAATCTAAAAAACCCAGAGATAGAGGAAACCTCAAAAGTAACGTTGACTGACCCCCAGACAAATGCAACAAATGACAGCTGCAAAAAGCGCATTAAGTCATCCCGCGGTAAGCTTTTGAAGAAAAGGAAACAAGAGATATCTCCACCTCAATCAAAACCAAATGGCAAGAAGGACTTGGTTGAGTTCAGTGACGATGTTAGCTTGAAGAAACTGTTGAAAGCAACAAGGAAGAAAGTAATTTATAAATTTGAGGGAGACACTGAAGCAGCAGAGTTAGAATTTGAAAGACTTAGCAAACTGAAGAGTAGAATAGACAGTATCAGGCAAAAAGTTCTGACAATTAAAAGTCAAACAGCCAAAGATTCAGAAGAATCCAAATCCAAAGAGCCATGGGTTATATATGTCCCCGTAGCTGAATTAAAAGAAAAAAGTTGA 2151 0.4091 MRDSEKNVNSRGSRTYKNSNAQTELKPCSSLRLKTSSPKSQVKKHKSKSHAHRVGANKSRKAVTDSSKEDPSKDFSNKNLIIRKCLHKTNGDPSQKPSTSKPPGENVSLGSEKEGKDVDGEVYIQKLKRRRRKKKRQRNNVDLDDASRLQRRLRYLLIKIKREQNLIDAYSGEGWKGQSQEKIRPEKELLRARKQILQCKLSIRDAIHQLDTLSSVGSIEGSVIAPDGSVYHEHIFCAKCKLREAFPDNDIILCDGTCNRAFHQKCLDPPLDTENIPPGDQGWFCKFCECKMEILESINAHLGTHFSLDSTWQDVFKEEASIPDGDTGLLNPEEEWPSDESDDDDYNPERREDSHNISAEDIDGDASDDSGSSTSLWNSDDGYSPGIGKESNDPEFFSVNSCIDSDESEEIACGRRQRKAVDYKKLYDEMFGKDAPALEQVSEDEDWGPGRKKRREKESDAANTLMTLHESENKSSNNEQNVMTEFSSDLQSKRPCFRLPRHAVEKLRQAFSENELPSRSVKESLSKELGLDADKVSKWFKNARYLALRARKQAEGAEEQTRSITSRSPKDSNLKNPEIEETSKVTLTDPQTNATNDSCKKRIKSSRGKLLKKRKQEISPPQSKPNGKKDLVEFSDDVSLKKLLKATRKKVIYKFEGDTEAAELEFERLSKLKSRIDSIRQKVLTIKSQTAKDSEESKSKEPWVIYVPVAELKEKS 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g01214 716 CDD homeodomain 493 553 IPR001356 GO:0003677
Accr12g01214 716 MobiDBLite consensus disorder prediction 91 106 - -
Accr12g01214 716 FunFam pathogenesis-related homeodomain protein 492 556 - -
Accr12g01214 716 MobiDBLite consensus disorder prediction 551 631 - -
Accr12g01214 716 MobiDBLite consensus disorder prediction 38 57 - -
Accr12g01214 716 MobiDBLite consensus disorder prediction 435 463 - -
Accr12g01214 716 ProSiteProfiles 'Homeobox' domain profile. 490 550 IPR001356 GO:0003677
Accr12g01214 716 MobiDBLite consensus disorder prediction 1 122 - -
Accr12g01214 716 FunFam pathogenesis-related homeodomain protein-like 228 288 - -
Accr12g01214 716 CDD PHD_PRHA_like 236 288 IPR045876 -
Accr12g01214 716 MobiDBLite consensus disorder prediction 321 393 - -
Accr12g01214 716 MobiDBLite consensus disorder prediction 579 599 - -
Accr12g01214 716 SMART PHD_3 236 289 IPR001965 -
Accr12g01214 716 Pfam Homeodomain 501 545 IPR001356 GO:0003677
Accr12g01214 716 Gene3D - 492 561 - -
Accr12g01214 716 MobiDBLite consensus disorder prediction 464 491 - -
Accr12g01214 716 ProSitePatterns Zinc finger PHD-type signature. 237 288 IPR019786 -
Accr12g01214 716 Coils Coil 124 144 - -
Accr12g01214 716 MobiDBLite consensus disorder prediction 348 362 - -
Accr12g01214 716 MobiDBLite consensus disorder prediction 333 347 - -
Accr12g01214 716 MobiDBLite consensus disorder prediction 58 81 - -
Accr12g01214 716 Pfam PHD-finger 236 291 IPR019787 -
Accr12g01214 716 SUPERFAMILY Homeodomain-like 492 553 IPR009057 -
Accr12g01214 716 MobiDBLite consensus disorder prediction 11 37 - -
Accr12g01214 716 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 36 715 - -
Accr12g01214 716 SMART HOX_1 492 554 IPR001356 GO:0003677
Accr12g01214 716 MobiDBLite consensus disorder prediction 435 491 - -
Accr12g01214 716 SUPERFAMILY FYVE/PHD zinc finger 228 294 IPR011011 -
Accr12g01214 716 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 228 285 IPR013083 -
Accr12g01214 716 ProSiteProfiles Zinc finger PHD-type profile. 234 291 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g01214 Accr-Chr12 14087840 14093596 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g01214 139 552 Homeobox Transcription Factor Family AT4G29940 60.187 8.39e-161 481
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Accr12g01214 PHD 2.4e-11 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g01214 - - gmx:100787118 845.499
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr12g01214 12 14087840 14093596 Accr12g01214 12 14087840 14093596 ECH