Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g01182 ATGGAGTGGGACAGCGATTCCGATCTTAGCACGGAGGAGGACGAGATTTATATGCTCGACGATGCTGGTCCTCTTCCTTTCCCCGTCAGCAACTTGCTCCAAGCGGCGCCGTGTGGGATTGTCGTCACTGACGCACTCGAGCTGGACCATCCTATTATATATGTCAATACGGTGTTCGAGAAGGTCACTGGGTATCGGGCAGAGGATGTGCTTGGTCGCAATTGCCGATTCTTGCAGTGTCGAGGCCCATTTGCTAAGAGAAGGCATACATTAGTGGACTCTGCAATAGTTTCAGAAATTAGGAGATGCCTTGAGAAGGGTATTGAATTCCAAGGTGAGTTGCTGAACTTTAGGAAAGATGGATCTCCACTGATGAACAGATTGCGGTTGACACCTATATATGGAGATGATGAGACTATAACACATATCATTGGAATTCAGTTCTTCGCAGAGGCAAACATTGATCTTGGCCCTGTTCCAGGTTCTACAATTAAGGAATCTTCCAAGTCATCTGATCAATTTCTATCTTCTCCCCTTGCCTCATTACGTCCTCTTCCAACAGGAGACCGTAATGTTTCTCGTGGATTTTGTGGGATATTGCAGTTGAGTGATGAGGTGTTGTCTCTCAAGATACTTTCTCGCTTAACTCCAAGAGATATTGCATCAGTTGGCTCTGTTTGTAGGCAATTGTATGAGCTAACAAGAAATGAAGATCTTTGGAGGATGGTATGTCAAAATGCATGGGGAAGTGAAACTACTAGTGTTTTAGAGACCGTACCTGCTGCAAGAAGACTTGGATGGGGTAGGCTGGCAAGGGAATTAACAACTCTTGAGGCTGCAGCGTGGAGGAAGTTGACTGTTGGGGGTGCTGTTGAGCCCTCACGTTGTAATTTCAGCGCTTGTGCAGTTGGTAATAGAGTCGTGCTATTTGGTGGTGAAGGGGTTAACATGCAACCTATGAATGACACCTTTGTATTGGATCTCAACTCTAGTAATCCTGAGTGGCAACATGTACAGGTAAGCTCTCCTCCTCCAGGTCGTTGGGGCCATACACTTTCTTGTGTTAATGGCTCTCATTTGGTTGTATTTGGAGGCTGTGGAACGCAAGGCTTGCTCAATGATGTCTTTGTGCTGGACTTGGATGAAAAGCCTCCAACTTGGCGTGAAATTTCTGGACTGGCACCACCACTTCCCAGATCATGGCATAGCTCCTGTACTCTTGATGGAACTAAGTTGATTGTTTCTGGTGGCTGTGCAGATTCTGGAGTGCTTTTGAGTGATACATTCCTGCTTGATCTGTCAATGGAGAAACCAGTTTGGAGAGAGATACCAGTGGCATGGACCCCACCTTCTCGTCTGGGCCATACACTCACTGTTTATGGTGGTAGGAAAATACTGATGTTTGGGGGTCTGGCCAAGAGTGGGCCACTGCGGTTCCGCTCTAGTGACGTATTCACAATGGATTTGAGTGAGGAAGAGCCATGCTGGAGATGTGTAACTGGTAGTGGAATGCCTGGTTCCGGGAATCCTGGGGGCATAGCTCCTCCTCCTAGACTTGATCATGTGGCTGTCAGTCTTCCTGGTGGGAGAATTCTGATATTTGGCGGGTCCGTTGCAGGTCTTCATTCTGCCTCCCAGCTTTACACCCTGGACCCAACCGATGAGAGGCCTACTTGGAGAATCTTAAATGTACCTGGGCACCCCCCAAGATTTGCTTGGGGACATAGCACTTGTGTTGTTGGAGGGACAAGAGCTATTGTACTGGGCGGTCAGACTGGAGAGGAATGGATGCTAAGCGAGCTCCATGAGCTTTCTCTGGCAAGTTCTGTGATCTAA 1836 0.4777 MEWDSDSDLSTEEDEIYMLDDAGPLPFPVSNLLQAAPCGIVVTDALELDHPIIYVNTVFEKVTGYRAEDVLGRNCRFLQCRGPFAKRRHTLVDSAIVSEIRRCLEKGIEFQGELLNFRKDGSPLMNRLRLTPIYGDDETITHIIGIQFFAEANIDLGPVPGSTIKESSKSSDQFLSSPLASLRPLPTGDRNVSRGFCGILQLSDEVLSLKILSRLTPRDIASVGSVCRQLYELTRNEDLWRMVCQNAWGSETTSVLETVPAARRLGWGRLARELTTLEAAAWRKLTVGGAVEPSRCNFSACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVQVSSPPPGRWGHTLSCVNGSHLVVFGGCGTQGLLNDVFVLDLDEKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVAWTPPSRLGHTLTVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGSGNPGGIAPPPRLDHVAVSLPGGRILIFGGSVAGLHSASQLYTLDPTDERPTWRILNVPGHPPRFAWGHSTCVVGGTRAIVLGGQTGEEWMLSELHELSLASSVI 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g01182 611 FunFam Adagio protein 1 27 158 - -
Accr12g01182 611 CDD PAS 36 146 IPR000014 -
Accr12g01182 611 Gene3D - 196 243 - -
Accr12g01182 611 Gene3D - 273 496 IPR015915 GO:0005515
Accr12g01182 611 SUPERFAMILY Galactose oxidase, central domain 282 596 IPR011043 -
Accr12g01182 611 FunFam Putative LOV domain-containing protein 477 610 - -
Accr12g01182 611 ProSiteProfiles PAS repeat profile. 29 107 IPR000014 -
Accr12g01182 611 FunFam Adagio protein 1 196 243 - -
Accr12g01182 611 FunFam Putative LOV domain-containing protein 272 476 - -
Accr12g01182 611 Pfam F-box-like 207 245 IPR001810 GO:0005515
Accr12g01182 611 Gene3D - 497 610 IPR015915 GO:0005515
Accr12g01182 611 Pfam Galactose oxidase, central domain 295 345 - -
Accr12g01182 611 NCBIfam PAS domain S-box protein 33 146 IPR000014 -
Accr12g01182 611 CDD F-box_AtADO-like 198 244 - -
Accr12g01182 611 Pfam Kelch motif 452 503 IPR011498 GO:0005515
Accr12g01182 611 Pfam PAS domain 37 147 IPR000014 -
Accr12g01182 611 Pfam Galactose oxidase, central domain 359 406 - -
Accr12g01182 611 SUPERFAMILY F-box domain 191 257 IPR036047 GO:0005515
Accr12g01182 611 Gene3D PAS domain 22 158 - -
Accr12g01182 611 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 28 608 - -
Accr12g01182 611 SUPERFAMILY PYP-like sensor domain (PAS domain) 36 147 IPR035965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g01182 Accr-Chr12 13434164 13438653 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g01182 8 242 AGC Kinase Gene Family AT5G58140 25.385 1.39e-12 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g01182 K12115 - tcc:18589282 1127.85