Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g01180 ATGGCTTCTGGAGCTGTGGCATTAATTCCTGTTTTCATCTTCATAGTTATGATTACTGTGGTTTATATGAGATTAACTAGAAAATGTTACCCTCGTGGCTCCCAGCTTATTGCAGTCTCAGAATTTCTGACATACACAATGGATAAGTTTCTCAATGAAATGGCAAGGGAGAAGCCAATAAGGTTCACATTACATACCCTAATGCTTGCAACTAACAATTACTCCAACATGTTGGGTTCAGGTGGTTTTGGATCAGTCTATAAAGGGACTTTTAGTGATGGAACCATCGTGGCAGTGAAGGTTTTGAATGGGAGCTCTGACAAAATAGAGGAGCAATTCATGGCTGAAGTAGGCACAATTGGAAGGGTTCATCATTTCAATCTACTTCGCCTCTTTGGATTTTGCATTGAGGGCAATATTAGGGCACTAGTTTATGAGTACATGGGCAACGGCTCGCTTGACAAGTATCTATTTAATAAAAACAAGGCGTTGGGATTTAAAAAGCTTCAAGAGATTGCGGTGGGAACTGCCAAAGGAATTTCGTATTTGCATGAAGAGTGCCAACAGAGAATTGTCCACTATGACATAAAACCAGAAAACATCCTCTTGGATGACAACTTGTGTCCTAAAGTTGCTGACTTTGGTTTGGCCAAGCTCTGCAATAGGGAAAATACTCATATTACCATGACAGGAGGTAGAGGGACCCCCGGTTATGCTGCACCAGAGCTTTGGATGCCGTTTCCGATAACCTACAAGTGTGATGTTTACAGTTTTGGAATGTTGTTATTTGAAATCATAGGTGGGAGAAGAAACCTTAATATTAACCTTGCAGAAGAGAGTAAAGAGTGGTTTCCAAGATGGGTTTGGATAAAATTTGATAGTGGAGATTTAAATGATATGATAACAGAATGCGGAATAGAGGAGAATGACAAGGAAATGGCAGAAAGAATGGTTAAGATAGCTCTTTGGTGTGTTCAGTATAAAGCTGAAATGAGGCCCGTGATGAGTGTTGTGGTGAAAATGTTGGAAGGTTCAGAGGAAATCCCACAACCTGTGAATCCTTTTCAGCACTTCATGGATTCAAGTTTTCCAGTACAATCAGTTCAAACATCAGAAATTGATACTAGTTTTACTTCTGGCTCTTCTTTAACAACATCTAAACCTGGCACTTTGAATGCTACTCCTATCATGAGTAAGCAGGGGATCCAAATAGCTTCAAGCCAGGATTAA 1230 0.4008 MASGAVALIPVFIFIVMITVVYMRLTRKCYPRGSQLIAVSEFLTYTMDKFLNEMAREKPIRFTLHTLMLATNNYSNMLGSGGFGSVYKGTFSDGTIVAVKVLNGSSDKIEEQFMAEVGTIGRVHHFNLLRLFGFCIEGNIRALVYEYMGNGSLDKYLFNKNKALGFKKLQEIAVGTAKGISYLHEECQQRIVHYDIKPENILLDDNLCPKVADFGLAKLCNRENTHITMTGGRGTPGYAAPELWMPFPITYKCDVYSFGMLLFEIIGGRRNLNINLAEESKEWFPRWVWIKFDSGDLNDMITECGIEENDKEMAERMVKIALWCVQYKAEMRPVMSVVVKMLEGSEEIPQPVNPFQHFMDSSFPVQSVQTSEIDTSFTSGSSLTTSKPGTLNATPIMSKQGIQIASSQD 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g01180 409 PANTHER OS07G0415500 PROTEIN 7 355 - -
Accr12g01180 409 SUPERFAMILY Protein kinase-like (PK-like) 53 343 IPR011009 -
Accr12g01180 409 ProSitePatterns Protein kinases ATP-binding region signature. 78 100 IPR017441 GO:0005524
Accr12g01180 409 Gene3D Transferase(Phosphotransferase) domain 1 148 353 - -
Accr12g01180 409 ProSiteProfiles Protein kinase domain profile. 72 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr12g01180 409 Gene3D Phosphorylase Kinase; domain 1 39 147 - -
Accr12g01180 409 Pfam Protein tyrosine and serine/threonine kinase 75 342 IPR001245 GO:0004672|GO:0006468
Accr12g01180 409 SMART serkin_6 72 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr12g01180 409 FunFam serine/threonine-protein kinase PBS1-like 44 147 - -
Accr12g01180 409 ProSitePatterns Serine/Threonine protein kinases active-site signature. 191 203 IPR008271 GO:0004672|GO:0006468
Accr12g01180 409 FunFam Putative receptor-like protein kinase 148 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g01180 Accr-Chr12 13420651 13422674 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g01180 61 352 Receptor kinase-like Gene Family AT1G66980 44.702 5.56e-80 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-Os Accr12g01180 PK_Tyr_Ser-Thr 1.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g01180 - - gmx:100816921 541.962