Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g01179 ATGTCTCCTCCACCGCCGTTTACTGTCTCAATGGGTGATTTTTCACTTACACCGCCGGATCCGGAGGTTCAATTGAGTGACACGTTTGATTCTGCCGTGAAATGGTCAACGGCTGCGAGTGTTGTTGTCACGGTGGTGTTGATTATAGCCATTATAGCAATAGCATGCGCCATTGTTAAGTGCTTGAAGAGAGCACCAACAATGTCAGTGATTCCATCTCAAATCCAGATTTCAACAACAGATCATAAGGCTTCAAACAACAACAAGGAAATTGCATTAGCAATACCAGCAGATTCAGATTCGCAAGAAGAAATGGAGTTTGCAACTATGGAAAGATTCCTCAACAACATCAACCAAGAGAAGCCCATCAGATTCTCACCCGAGGAACTCAAACAAATCACAAACAACTACACAACTATTTTGGGTTCTGGTGCTTTTGGGGTGGTTTATAAAGGTGAATTGCCAAATGAAGAGAAAGTTGCAGTCAAAGTTCTCAACGGTATGGATCTTGGTACAGAAGAACAATTCAAGGCAGAAGTTAGCACCATTGGAAGAACTTACCATATCAACCTTGTCAGGCTATACGGCTTCTGTTTCCACAGTGACAAGAGAGCTCTTGTATATGAGTTCGTACCAAATGGTTCTCTCTACAGTTTATTATTTGGCAGTCTCAACACACAAATTGAGTTTGGGAAGCTTCATGAGATTGCGATTGGAACAGCGAAAGGAATCGCCTACTTACACGAGGAGTGTCAACATAGGATCATTCATTATGATATTAAGCCAGAGAATATACTTCTTGGCCTGAACTTGGAACCAAAAGTAGCAGATTTTGGTCTCGCGAAACTTTGTAGCAGAGAAAGTAGCCATGTGAATATGTCCCACTTCAGAGGAACAAGAGGGTATGCTGCACCTGAATTGTGGAAGCTTTATCCTGTAAATCATAAGTGTGATGTTTATAGTTTTGGTATTGTTCTGTTTGAAATTGTGGGGAGGAGAAGGCATTTTGATAGTGGTTATAGTGAATCACAACAATGGCTTCCAAAATGGGCATGGGACATGGTTGAGAACAATGAATTACCAATGATGCTTTCACTGTTTGGGATTGGAGAAGAAGAAGCCAGGGGAAAAGCTGAGAGAATGATAATGGTGGCTCTATGGTGTGTTCAATATTTGCCTACTGATAGGCCTCTTATGAGTAATGTGATAAAGATGTTGGAAGGTGACGTAGAAATCTCTCCACCACCATTTCCCTTTCAGAATTTGGTGTCTTCTAAACCAAATTTTACACCACAGGGAACCATTAATGAAGATTCAAATGCTTCTTCTTCTTTTGAATTAAAGAGGCATGCATTGACAGTCTGA 1365 0.4103 MSPPPPFTVSMGDFSLTPPDPEVQLSDTFDSAVKWSTAASVVVTVVLIIAIIAIACAIVKCLKRAPTMSVIPSQIQISTTDHKASNNNKEIALAIPADSDSQEEMEFATMERFLNNINQEKPIRFSPEELKQITNNYTTILGSGAFGVVYKGELPNEEKVAVKVLNGMDLGTEEQFKAEVSTIGRTYHINLVRLYGFCFHSDKRALVYEFVPNGSLYSLLFGSLNTQIEFGKLHEIAIGTAKGIAYLHEECQHRIIHYDIKPENILLGLNLEPKVADFGLAKLCSRESSHVNMSHFRGTRGYAAPELWKLYPVNHKCDVYSFGIVLFEIVGRRRHFDSGYSESQQWLPKWAWDMVENNELPMMLSLFGIGEEEARGKAERMIMVALWCVQYLPTDRPLMSNVIKMLEGDVEISPPPFPFQNLVSSKPNFTPQGTINEDSNASSSFELKRHALTV 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g01179 454 Pfam Protein kinase domain 139 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr12g01179 454 SUPERFAMILY Protein kinase-like (PK-like) 117 407 IPR011009 -
Accr12g01179 454 ProSiteProfiles Protein kinase domain profile. 135 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr12g01179 454 SMART serkin_6 135 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr12g01179 454 ProSitePatterns Protein kinases ATP-binding region signature. 141 163 IPR017441 GO:0005524
Accr12g01179 454 ProSitePatterns Serine/Threonine protein kinases active-site signature. 255 267 IPR008271 GO:0004672|GO:0006468
Accr12g01179 454 Gene3D Transferase(Phosphotransferase) domain 1 211 412 - -
Accr12g01179 454 FunFam S-receptor-like serine/threonine-protein kinase 102 210 - -
Accr12g01179 454 Gene3D Phosphorylase Kinase; domain 1 97 210 - -
Accr12g01179 454 FunFam Putative receptor-like protein kinase 211 414 - -
Accr12g01179 454 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 41 417 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g01179 Accr-Chr12 13408451 13410177 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g01179 124 445 Receptor kinase-like Gene Family AT5G38280 42.216 4.48e-84 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-Os Accr12g01179 Pkinase 7.1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g01179 - - pcin:129320890 636.721