Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g01177 ATGGCATCTTCTTCAACCGTGGCATCTTTATGGAGGGCAAATCACATTCGTATGATAATCATTTTCACGGTTTCCTTCATTGCCTGGTTAGTGATACCGTTTTTTGTTCAAGTTCCACTCCAACCCGTTTTTCAGATAATCATTTTCGCGGTCGGCCCGGCCGTGGTTGTAATTGGCATTTCAGTATTTGCCATATTAAAATATCGTAAAAGATTTATTGAGGACAAAAGGCATCGCACAGAGTTTCTGACATTAACTATGGAAAAGTTTCTGAATGATTTGGAAAGAGAGAGCCCAACAATGTTCACCTCAGACAACCTAGTACGTGCAACAAACAACTACTCCGACATGCTGGGGTCAGGAGGTTTTGGATCAGTCTATAAAGGAACTTTCAGTGATGGAACTGTTGTTGCCGTCAAAGTTCTAAATGGCACTTTTGACGAGAGAATGGAGCAGCAATTCATGGCTGAAGTCGCCACAATTGGAAAAGTTCGTCACTTAAATCTGGTTCGCCTCATCGGATTTTGCATTGAAAAGAATACGACAGCTCTAGTTTATGAGTACATGAGCAATGGCTCTCTTGACAAATATCTATTTCGTGAAAATAATAAAAGCTTAGTGTTTGAGAAGCTACATGAGATTGCAGTTGGAACAGCCCAAGGAATCGCTTACTTGCATGAAGAATACCGAGAGAGGATCATCCACTACGACATAAAACCAGAAAATATCCTTTTGGATGATAGTTTGCATTGCAAAATTGCTGATTTTGGTTTAGCCATGCTTTATAATAGGGACAAGTCTTATGTCACTATGACACGTCAAAGAGGGACTCCAGGTTATGCTGCACCGGAACTTTGGATGCCTTTTCCTGTAACTCACAAGTGTGATATTTATAGCTTTGGAATAATGTTATTTGAAATCATACGAAGACGAAGACACTATGATGCGAACCTCCCAAGTATTCAACAGTGGTTTCCAAGATGGGTTTGGATAAAGTTTGAGAATAAAAATCTAGAAGAGCTGATAACAGAATGTGGTATTGAAGATAACGATAAAGAGAAAGTGAAAAGAATGATAAAGGTAGCTCTATGGTGTGTTCAGTATAGACCAGATTTGAGACCTAAAATGAGTGATGTGGTGAAAATGTTGGAAGGCTCCATGGATGTTCGAGAACCTTCAAACCCATTTCAACAATTGTTGGAAGAAAATCATGGAATTGAAGCATCACAAATGGATAGTAGTAGTGATGATGACGACCTCGTTGTGCCTTCTCCTCATGAACTTTGA 1287 0.3955 MASSSTVASLWRANHIRMIIIFTVSFIAWLVIPFFVQVPLQPVFQIIIFAVGPAVVVIGISVFAILKYRKRFIEDKRHRTEFLTLTMEKFLNDLERESPTMFTSDNLVRATNNYSDMLGSGGFGSVYKGTFSDGTVVAVKVLNGTFDERMEQQFMAEVATIGKVRHLNLVRLIGFCIEKNTTALVYEYMSNGSLDKYLFRENNKSLVFEKLHEIAVGTAQGIAYLHEEYRERIIHYDIKPENILLDDSLHCKIADFGLAMLYNRDKSYVTMTRQRGTPGYAAPELWMPFPVTHKCDIYSFGIMLFEIIRRRRHYDANLPSIQQWFPRWVWIKFENKNLEELITECGIEDNDKEKVKRMIKVALWCVQYRPDLRPKMSDVVKMLEGSMDVREPSNPFQQLLEENHGIEASQMDSSSDDDDLVVPSPHEL 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g01177 428 ProSitePatterns Protein kinases ATP-binding region signature. 118 140 IPR017441 GO:0005524
Accr12g01177 428 MobiDBLite consensus disorder prediction 403 428 - -
Accr12g01177 428 ProSiteProfiles Protein kinase domain profile. 112 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr12g01177 428 SMART serkin_6 112 383 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr12g01177 428 PANTHER OS07G0415500 PROTEIN 47 397 - -
Accr12g01177 428 ProSitePatterns Serine/Threonine protein kinases active-site signature. 233 245 IPR008271 GO:0004672|GO:0006468
Accr12g01177 428 FunFam serine/threonine-protein kinase PBS1-like 84 188 - -
Accr12g01177 428 SUPERFAMILY Protein kinase-like (PK-like) 95 384 IPR011009 -
Accr12g01177 428 Pfam Protein tyrosine and serine/threonine kinase 115 383 IPR001245 GO:0004672|GO:0006468
Accr12g01177 428 FunFam Putative receptor-like protein kinase 189 391 - -
Accr12g01177 428 Gene3D Transferase(Phosphotransferase) domain 1 189 403 - -
Accr12g01177 428 Gene3D Phosphorylase Kinase; domain 1 86 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g01177 Accr-Chr12 13357701 13359599 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g01177 102 398 Receptor kinase-like Gene Family AT1G66980 42.763 8.63e-74 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-Os Accr12g01177 PK_Tyr_Ser-Thr 8.1e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g01177 - - qsa:O6P43_002842 461.455