Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g01176 ATGTCACCTGAATCTCAAAGAGTGCTCATTAGCTTGATTACAAGTGTGCTTCCGGTCTTCATACTGATAATCATATATGTCTTTTATTGCAAAATATGTATGTTCAAGAGGCGCAAACCAGCAAAAGTGAGAGAACTGGAAAGTGGGACGAACTCAGAGTTTATAACATATAGAATGGATAAGTTTCTCAATGATATTGAATCAGAAAAGCCAATCAGATTCACTTCACATGAACTAATGCGTGCAACAAACAACTACTCCAACACGTTGGGGTCAGGAGCTTTTGGATCAGTTTATAAAGGAACTTCTGTTGATGGATCTGTTGTTGCAGTTAAAGTTCTACGTGGTGGCATTTCTGACAAGAGGATGGAGGAGCAATTCATGGCTGAAGTCGGCACAATTGGACGAGTTCATCATTTCAATCTGGTTCGCCTCATTGGATTTTGTGTCGAAAAGGACACGGCAGCTCTAATTTATGAGTACATGAGCAATGGCTCTCTCGACAAATATCTGTTTGGTGAAAATAATAAGAGCTTAGCATTTGAGAAGCTGCATGAGATTACGGTTGGAACAGCCAAAGGAATTGCTTACCTACATGAAGAATGCCAAGAGAGGATCATTCACTATGACATAAAACCAGAAAACATCCTTTTGGACGATGATTTGCATCCTAAAGTTTCTGATTTTGGTTTGGCCAAGCTTTGTAATAGGGAAAAGTCTTATATCACCATGACAGGTCTAAGAGGCACACCAGGTTATGCTGCGCCAGAACTTTGGATGCCTTTTCGTGTAACTCACAAGTGCGATGTTTTCAGCTTTGGGATGTTGTTATTTGAGATCATAGGAAGAAGAAGGAACTATGATGCAAACCTGTCAGAAAGTGAAGAATGGTTTCCCAGATTGGTTTGGATCAAGTTTGAGAGTGAAAACCTAGAAGAGTTGATAAACGATTGTGGTATTAAATATAAAGACATGGATATGGTGAAAAGAATGGCGAGGATAGCTTTTTTATGTGTTCAGTATAGACCAGAACTGAGACCCATGATGAGTGTTGTGGTGAAAATGTTGGAAGGCTCGATGGATATCCCAAATCCTACAAATCCATTTCAACACCTGATGGAAGAAGATGTTCCAACAATTAAAGTAGCACAAAAGGAAGTCAGTATCAATGTTGTCTCGTCTCTTCAGGTAACCGAATCTTCCATTGTCTCATCATCTCCTGAGATTGATATGGATTCTATCCAAAATTAA 1251 0.3933 MSPESQRVLISLITSVLPVFILIIIYVFYCKICMFKRRKPAKVRELESGTNSEFITYRMDKFLNDIESEKPIRFTSHELMRATNNYSNTLGSGAFGSVYKGTSVDGSVVAVKVLRGGISDKRMEEQFMAEVGTIGRVHHFNLVRLIGFCVEKDTAALIYEYMSNGSLDKYLFGENNKSLAFEKLHEITVGTAKGIAYLHEECQERIIHYDIKPENILLDDDLHPKVSDFGLAKLCNREKSYITMTGLRGTPGYAAPELWMPFRVTHKCDVFSFGMLLFEIIGRRRNYDANLSESEEWFPRLVWIKFESENLEELINDCGIKYKDMDMVKRMARIAFLCVQYRPELRPMMSVVVKMLEGSMDIPNPTNPFQHLMEEDVPTIKVAQKEVSINVVSSLQVTESSIVSSSPEIDMDSIQN 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g01176 416 ProSiteProfiles Protein kinase domain profile. 84 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr12g01176 416 ProSitePatterns Protein kinases ATP-binding region signature. 90 112 IPR017441 GO:0005524
Accr12g01176 416 SUPERFAMILY Protein kinase-like (PK-like) 66 357 IPR011009 -
Accr12g01176 416 Gene3D Phosphorylase Kinase; domain 1 58 161 - -
Accr12g01176 416 Pfam Protein tyrosine and serine/threonine kinase 87 356 IPR001245 GO:0004672|GO:0006468
Accr12g01176 416 FunFam serine/threonine-protein kinase PBS1-like 56 161 - -
Accr12g01176 416 PANTHER OS07G0415500 PROTEIN 11 369 - -
Accr12g01176 416 FunFam Putative receptor-like protein kinase 162 364 - -
Accr12g01176 416 SMART serkin_6 84 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr12g01176 416 Gene3D Transferase(Phosphotransferase) domain 1 162 368 - -
Accr12g01176 416 ProSitePatterns Serine/Threonine protein kinases active-site signature. 206 218 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g01176 Accr-Chr12 13350375 13352559 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g01176 73 378 Receptor kinase-like Gene Family AT5G38280 41.534 3.41e-76 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-Os Accr12g01176 PK_Tyr_Ser-Thr 5.7e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g01176 - - pcin:129297340 498.434