Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g01173 ATGGAAGAAAAAAGAGAACTTATCTATGAGATATCCAAGTCCCAGGGTGCATCAGAGATGTTACAGTCATGGAGCCGACAAGAGATTTTGAAAATTCTGTGTGCAGAGATGGGTAAAGAAAGAAAGTATACTGGCTTGACAAAGTTGAAAATCATAGAAAATCTTTTAAAAATTGTCTCTGAAAAGAAATATGGAAAGCAGGAAATTACAACAGATCTTGAACCACTTTCTCCTTCTGCAAATGAGCAGAAGCCAGCTAAAAGGCAGAGAAAAACAGAGAATCCATCTCGATTGCCTATTCCAGCAAGCAATAGTCCAATCACTAACAGCGATGGAGATTTAGGCAGTATTAGAACTACATATTGTAAAAATTCAGCTTGCAAAGCCACCCTAAGTCAAGGAGATGTATTTTGCAAAAGATGCTCGTGCTGCATTTGTCATCAATATGATGACAACAAAGATCCTAGCTTGTGGTTAATATGTAACTCTGACCCTCCATTTCATGGTGTTTCTTGTGGCTTGTCATGCCATCTTGAATGTGCTCTAAAACACTATGGTTCCGGCATTGCCAAAAATGGAGTGCATCCCAAGCTTGATGGAAGTTTCTACTGTGTCTCATGTGGGAAAGTAAATGATTTGCTCGGATGTTGTAGAAAACAACTGTCAATGGGAAAGTGCACCAGGCGTGTGGACATTCTCTGCTATCGTCTCTCCTTGACCCAAAAACTTTTACAAGGGACTGAAAAGTATAAAAACCTTTATGAAATAATTGATGAGGCTGTGAAGAAACTTGAACCTGAGGTTGGTCCATTAACTAGCTCACCAGTGAAGATTGGTAGGGGAATTGTGAACAGACTTTCATCAGGACCAGAGGTCCAGAAACTCTGTGGTTCTGCTTTGGAATCGCTGGATTCATCACTTTCTGAGATGCTCTTGCCTCCATCATCAAGTCCGACATATCCAGATACAAAGTTGGTCGCTTCAGATATGGTGGGATTTGAAGATGTCACTGCAACATCACTAACTGTAGTTTTGGGCTCTGAAAATCCATCTGGGGAAAATATTGTTGGTTACAACTTGTGGCATCGGGTGGCTCATGGCGTGGACTATCCCTTGGACTCAACTTGTACATTGCATCCACCAGACAGAAGGTTCACCATCAGGGATCTGATTCCAGCTACAGAATACATCTTCAAAGCTGTTGCCTTCAATCATTCGAGGGAGTTGAGCACATGTGAAGTCCATGTTTTGACGGAGCAAGGTGAGGAAGAAGCACCCAACTGCTCAACAACAGAAAGAAGTCAGAGCCCAGTGACAAACTGTAGCAGCCTTTCCAATCCTTCCTCACTAGAAGATGAAACTAACAACAGTAATCCATATTGTGACCAGACCAATAACCAAGTGGAGAATCATCGTACTGATCAAAAGGACACCGACAAACTTGCTTCAGGAAGTTTAGCCAATGGCCCCACTAACTGTTCCAACATAGGCGAAGGTAGACTTCCAGAAGATGCCGATTCCTTACCGGACAAGGAACATACTGCAGGAAAAACTGGGCCTTTACCTTGTTCTGAAAAAAAGAACTCGCCAGAGGAGCAAGTCGCTGAGGACATGAGCATTGATAACGGACCTAATGCTTCGGCTCAAGCTGGGAGGGATGGTGTGTTATTAGCAGGTGGCTCAGAGGAAGGCCTTCCCATTACTCCATGTAAGTTGGAAATGCTCAAGGACGGGCCTGGAAGAAAGGGGAAGTTCAAATCCAGTGGCAAGGTCAAGGATCAAGAAAATGAGTCTGGGAAGAGAAAATGCCCTCAAGACGGAACCAAATCGAAGAAGAGAAATGGAGAAAGGCAGCAACAAGTTGAGGAGTGTGATGCAGATGGGTTTTCTTCTGATGGTGATTTTGAGTATTATGTTAAAGTGATTAGAAGGTTAGAGTGTGAAGGACACATAGAGAAGAACTTTAGGCAGAAATTTCTGACTTGGTACAGCTTGAGAGCAACAGCCCAAGAAATTAGGGTTGTGAAAGTATATATTGATACCTTCATTGAAGATCCAACTTCTCTTGCTGAGCAGCTTGCGGACACCTTCTCAGATTGCGTATCAAGCAGGAAAACATCTATGGTGCCACCTGGGTTCTGCATGAAGCTTTGGCATTAG 2160 0.4301 MEEKRELIYEISKSQGASEMLQSWSRQEILKILCAEMGKERKYTGLTKLKIIENLLKIVSEKKYGKQEITTDLEPLSPSANEQKPAKRQRKTENPSRLPIPASNSPITNSDGDLGSIRTTYCKNSACKATLSQGDVFCKRCSCCICHQYDDNKDPSLWLICNSDPPFHGVSCGLSCHLECALKHYGSGIAKNGVHPKLDGSFYCVSCGKVNDLLGCCRKQLSMGKCTRRVDILCYRLSLTQKLLQGTEKYKNLYEIIDEAVKKLEPEVGPLTSSPVKIGRGIVNRLSSGPEVQKLCGSALESLDSSLSEMLLPPSSSPTYPDTKLVASDMVGFEDVTATSLTVVLGSENPSGENIVGYNLWHRVAHGVDYPLDSTCTLHPPDRRFTIRDLIPATEYIFKAVAFNHSRELSTCEVHVLTEQGEEEAPNCSTTERSQSPVTNCSSLSNPSSLEDETNNSNPYCDQTNNQVENHRTDQKDTDKLASGSLANGPTNCSNIGEGRLPEDADSLPDKEHTAGKTGPLPCSEKKNSPEEQVAEDMSIDNGPNASAQAGRDGVLLAGGSEEGLPITPCKLEMLKDGPGRKGKFKSSGKVKDQENESGKRKCPQDGTKSKKRNGERQQQVEECDADGFSSDGDFEYYVKVIRRLECEGHIEKNFRQKFLTWYSLRATAQEIRVVKVYIDTFIEDPTSLAEQLADTFSDCVSSRKTSMVPPGFCMKLWH 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g01173 719 Pfam PHD - plant homeodomain finger protein 122 241 IPR032881 -
Accr12g01173 719 MobiDBLite consensus disorder prediction 572 625 - -
Accr12g01173 719 MobiDBLite consensus disorder prediction 421 551 - -
Accr12g01173 719 ProSiteProfiles Fibronectin type-III domain profile. 326 421 IPR003961 GO:0005515
Accr12g01173 719 MobiDBLite consensus disorder prediction 96 111 - -
Accr12g01173 719 MobiDBLite consensus disorder prediction 575 623 - -
Accr12g01173 719 MobiDBLite consensus disorder prediction 423 468 - -
Accr12g01173 719 MobiDBLite consensus disorder prediction 70 111 - -
Accr12g01173 719 CDD FN3 331 404 IPR003961 GO:0005515
Accr12g01173 719 Gene3D Immunoglobulins 327 426 IPR013783 -
Accr12g01173 719 CDD PHD_VIN3_plant 142 207 - -
Accr12g01173 719 MobiDBLite consensus disorder prediction 480 495 - -
Accr12g01173 719 PANTHER VIN3-LIKE PROTEIN 2-RELATED 1 719 IPR044514 GO:0010048|GO:0040029
Accr12g01173 719 SUPERFAMILY Fibronectin type III 333 406 IPR036116 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g01173 Accr-Chr12 13275867 13279453 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g01173 1 456 PHD Gene Family AT4G30200 55.441 7.39e-157 466
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g01173 - - gmx:100794721 1003.05