Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g01172 ATGGTAATGGATTCGTCTTTTGAAGGTGCCACACTTGATCCATCTAAATGCAGAAAGTTGAGTATGGAAGAAAAAAGAGAACTTATCTATGAGATATCCAAGTCCCAGGGTGCATCAGAGATGTTACAGTCATGGAGCCGACAAGAGATTTTGAAAATTCTGTGTGCAGAGATGGGTAAAGAAAGAAAGTATACTGGCTTGACAAAGTTGAAAATCATAGAAAATCTTTTAAAAATTGTCTCTGAAAAGAAATATGGAAAGCAGGAAATTACAACAGATCTTGAACCACTTTCTCCTTCTGCAAATGAGCAGAAGCCAGCTAAAAGGCAGAGAAAAACAGAGAATCCATCTCGATTGCCTATTCCAGCAAGCAATAGTCCAATCACTAACAGCGATGGAGATTTAGGCAGTATTAGAACTACATATTGTAAAAATTCAGCTTGCAAAGCCACCCTAAGTCAAGGAGATGTATTTTGCAAAAGATGCTCGTGCTGCATTTGTCATCAATATGATGACAACAAAGATCCTAGCTTGTGGTTAATATGTAACTCTGACCCTCCATTTCATGGTGTTTCTTGTGGCTTGTCATGCCATCTTGAATGTGCTCTAAAACACTATGGTTCCGGCATTGCCAAAAATGGAGTGCATCCCAAGCTTGATGGAAGTTTCTACTGTGTCTCATGTGGGAAAGTAAATGATTTGCTCGGATGTTGTAGAAAACAACTGTCAATGGGAAAGTGCACCAGGCGTGTGGACATTCTCTGCTATCGTCTCTCCTTGACCCAAAAACTTTTACAAGGGACTGAAAAGTATAAAAACCTTTATGAAATAATTGATGAGGCTGTGAAGAAACTTGAACCTGAGGTTGGTCCATTAACTAGCTCACCAGTGAAGATTGGTAGGGGAATTGTGAACAGACTTTCATCAGGACCAGAGGTCCAGAAACTCTGTGGTTCTGCTTTGGAATCGCTGGATTCATCACTTTCTGAGATGCTCTTGCCTCCATCATCAAGTCCGACATATCCAGATACAAAGTTGGTCGCTTCAGATATGGTGGGATTTGAAGATGTCACTGCAACATCACTAACTGTAGTTTTGGGCTCTGAAAATCCATCTGGGGAAAATATTGTTGGTTACAACTTGTGGCATCGGGTGGCTCATGGCGTGGACTATCCCTTGGACTCAACTTGTACATTGCATCCACCAGACAGAAGGTTCACCATCAGGGATCTGATTCCAGCTACAGAATACATCTTCAAAGCTGTTGCCTTCAATCATTCGAGGGAGTTGAGCACATGTGAAGTCCATGTTTTGACGGAGCAAGGTGAGGAAGAAGCACCCAACTGCTCAACAACAGAAAGAAGTCAGAGCCCAGTGACAAACTGTAGCAGCCTTTCCAATCCTTCCTCACTAGAAGATGAAACTAACAACAGTAATCCATATTGTGACCAGACCAATAACCAAGTGGAGAATCATCGTACTGATCAAAAGGACACCGACAAACTTGCTTCAGGAAGTTTAGCCAATGGCCCCACTAACTGTTCCAACATAGGCGAAGGTAGACTTCCAGAAGATGCCGATTCCTTACCGGACAAGGAACATACTGCAGGAAAAACTGGGCCTTTACCTTGTTCTGAAAAAAAGAACTCGCCAGAGGAGCAAGTCGCTGAGGACATGAGCATTGATAACGGACCTAATGCTTCGGCTCAAGCTGGGAGGGATGGTGTGTTATTAGCAGGTGGCTCAGAGGAAGGCCTTCCCATTACTCCATGTAAGTTGGAAATGCTCAAGGACGGGCCTGGAAGAAAGGGGAAGTTCAAATCCAGTGGCAAGGTCAAGGATCAAGAAAATGAGTCTGGGAAGAGAAAATGCCCTCAAGACGGAACCAAATCGAAGAAGAGAAATGGAGAAAGGCAGCAACAAGTTGAGGAGTGTGATGCAGATGGGTTTTCTTCTGATGGTGATTTTGAGTATTATGTTAAAGTGATTAGAAGGTTAGAGTGTGAAGGACACATAGAGAAGAACTTTAGGCAGAAATTTCTGACTTGGTACAGCTTGAGAGCAACAGCCCAAGAAATTAGGGTTGTGAAAGTATATATTGATACCTTCATTGAAGATCCAACTTCTCTTGCTGAGCAGCTTGCGGACACCTTCTCAGATTGCGTATCAAGCAGGAAAACATCTATGGTGCCACCTGGGTTCTGCATGAAGCTTTGGCATTAG 2223 0.4291 MVMDSSFEGATLDPSKCRKLSMEEKRELIYEISKSQGASEMLQSWSRQEILKILCAEMGKERKYTGLTKLKIIENLLKIVSEKKYGKQEITTDLEPLSPSANEQKPAKRQRKTENPSRLPIPASNSPITNSDGDLGSIRTTYCKNSACKATLSQGDVFCKRCSCCICHQYDDNKDPSLWLICNSDPPFHGVSCGLSCHLECALKHYGSGIAKNGVHPKLDGSFYCVSCGKVNDLLGCCRKQLSMGKCTRRVDILCYRLSLTQKLLQGTEKYKNLYEIIDEAVKKLEPEVGPLTSSPVKIGRGIVNRLSSGPEVQKLCGSALESLDSSLSEMLLPPSSSPTYPDTKLVASDMVGFEDVTATSLTVVLGSENPSGENIVGYNLWHRVAHGVDYPLDSTCTLHPPDRRFTIRDLIPATEYIFKAVAFNHSRELSTCEVHVLTEQGEEEAPNCSTTERSQSPVTNCSSLSNPSSLEDETNNSNPYCDQTNNQVENHRTDQKDTDKLASGSLANGPTNCSNIGEGRLPEDADSLPDKEHTAGKTGPLPCSEKKNSPEEQVAEDMSIDNGPNASAQAGRDGVLLAGGSEEGLPITPCKLEMLKDGPGRKGKFKSSGKVKDQENESGKRKCPQDGTKSKKRNGERQQQVEECDADGFSSDGDFEYYVKVIRRLECEGHIEKNFRQKFLTWYSLRATAQEIRVVKVYIDTFIEDPTSLAEQLADTFSDCVSSRKTSMVPPGFCMKLWH 740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g01172 740 Gene3D Immunoglobulins 348 447 IPR013783 -
Accr12g01172 740 MobiDBLite consensus disorder prediction 596 644 - -
Accr12g01172 740 Pfam PHD - plant homeodomain finger protein 143 262 IPR032881 -
Accr12g01172 740 CDD PHD_VIN3_plant 163 228 - -
Accr12g01172 740 MobiDBLite consensus disorder prediction 501 516 - -
Accr12g01172 740 MobiDBLite consensus disorder prediction 444 489 - -
Accr12g01172 740 MobiDBLite consensus disorder prediction 442 572 - -
Accr12g01172 740 MobiDBLite consensus disorder prediction 91 132 - -
Accr12g01172 740 ProSiteProfiles Fibronectin type-III domain profile. 347 442 IPR003961 GO:0005515
Accr12g01172 740 SUPERFAMILY Fibronectin type III 354 427 IPR036116 GO:0005515
Accr12g01172 740 CDD FN3 352 425 IPR003961 GO:0005515
Accr12g01172 740 MobiDBLite consensus disorder prediction 593 646 - -
Accr12g01172 740 MobiDBLite consensus disorder prediction 117 132 - -
Accr12g01172 740 PANTHER VIN3-LIKE PROTEIN 2-RELATED 10 740 IPR044514 GO:0010048|GO:0040029
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g01172 Accr-Chr12 13275162 13279453 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g01172 3 477 PHD Gene Family AT4G30200 55.534 1.63e-164 486
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g01172 - - gmx:100794721 1034.25