Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g01171 ATGGACTCTTCTTCCTCCTCCTCCTCCTCTAACTGGCTTGCTTTCTCTCTCTCCCACCCCTTATCTTCCTCCTCCCACTTCCCTCTCTTCCCTTCCTTCACCTCCCCTTCCCCTACCCCCACTCTCTCTCTCGCAGGTAACAGCACCGTCGTCGACGTGCCTGCCGAAACCAAAGATGGTGGTGCGGTCACAGGAGCACCGACTAGCCTCTCCATGTTCACCGGGGGACCTAAGTTTGAGGACTTCCTCGGCGGAGCCGCCGCCTCAGCAGCTGCTCCCACAGCTAGCGCACCGCCTCCGCAGTTCTCCGCCGACAACACGCTGAGCACGGTGGTTGAGAACGAGATATACGATTCCGAGCTGAAAACCATTGCTGCCAGCTTCCTTCGTGGCTTTGCCTCCGGAGGAGCGCAAACCGAGCCGCAACAGAAACAGGCTCAGATGATCCCGATAGAACCGTCGCCAAAGAAGAGCGTCGACACCTTCGGCCAACGCACCTCCATCTACCGCGGCGTCACACGGCATAGATGGACAGGAAGGTACGAAGCTCATCTGTGGGATAACAGTTGCAGAAGGGAGGGGCAAAGTCGGAAAGGAAGACAAGTGTATTTGGGTGGCTACGATAAGGAAGAGAAGGCAGCCAGGGCTTATGATCTCGCCGCTCTCAAGTACTGGGGTCCGACCACCACCACCAACTTTCCGATTTCAAACTACCAGAAGGAACTGGAAGAGATGAAGAGTATGACAAGGCAGGAATTTGTTGCTTCTCTTCGAAGGAGGAGTAGTGGATTCTCGAGAGGCGCCTCAATATATAGAGGAGTGACGAGGCATCACCAGCATGGCCGATGGCAGGCAAGAATAGGCAGAGTCGCCGGAAACAAAGACCTCTACCTTGGCACTTTCAGTACTCAAGAGGAAGCAGCGGAGGCGTATGATATAGCGGCCATTAAGTTCAGAGGAATCAACGCGGTGACCAACTTTGACATGAGCCGCTACGACGTGAAGAGCATTGCCAACAGTAGCCTTCCCGTTGGTGGACTATCCGGCAAGACCAAGAACACGTCGGATTCTTCTCTGTCCGACCACCACCACAACAGCAAGAGCCCTGATGCCGACCGAGACCTCTCCTCCACCAACTCCTCGGTCACGTTTGTATCCCAACCGCCACCGCCACCTCCAAGCACTAATAACAATTCTCTCACCTTCGCCATACCCATCAAACAGGACGCTACTTCAGATCATCATTACTGGTCCTCCGTTCTCGCCGGTTACAGCAAAAACCCTACCTTGATCCAACAATCTTCCTGCGCCAATGGCTCCGTGACATCTGTCCTACCCTTCAACGTGGACCTCTCTACTGCTCCCTCCAGTACCAGCAGTGAAGGAAACAACATCAACTACAATAATCATAATAATGGGCTTTTCAGTGGAGGAGGCATGCTTGTTCATCAGCAGCAACAACAAAGTGGCAATAACAATAACAACAACAATAATAATAGTGGTGGTGGCTCGTCGTCTCCTTCTTCTGGATCGAGTTCATTGATGATCCCATTGGCCACGCCCATTGCCTTAAATAGTAACCCTAGTTATGAGAGCTCTTCTTCTAGTTATGGAAACTGGAGCATCATTGGGCCTACGCCTACCCTGCACACCTTCCAAACCCATGCAAAACCTAGTCTCTTTCAAACACCAATTTTTGGCATGGAATAA 1710 0.5251 MDSSSSSSSSNWLAFSLSHPLSSSSHFPLFPSFTSPSPTPTLSLAGNSTVVDVPAETKDGGAVTGAPTSLSMFTGGPKFEDFLGGAAASAAAPTASAPPPQFSADNTLSTVVENEIYDSELKTIAASFLRGFASGGAQTEPQQKQAQMIPIEPSPKKSVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEEKAARAYDLAALKYWGPTTTTNFPISNYQKELEEMKSMTRQEFVASLRRRSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGINAVTNFDMSRYDVKSIANSSLPVGGLSGKTKNTSDSSLSDHHHNSKSPDADRDLSSTNSSVTFVSQPPPPPPSTNNNSLTFAIPIKQDATSDHHYWSSVLAGYSKNPTLIQQSSCANGSVTSVLPFNVDLSTAPSSTSSEGNNINYNNHNNGLFSGGGMLVHQQQQQSGNNNNNNNNNSGGGSSSPSSGSSSLMIPLATPIALNSNPSYESSSSSYGNWSIIGPTPTLHTFQTHAKPSLFQTPIFGME 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g01171 569 Pfam AP2 domain 270 320 IPR001471 GO:0003700|GO:0006355
Accr12g01171 569 Pfam AP2 domain 168 226 IPR001471 GO:0003700|GO:0006355
Accr12g01171 569 SUPERFAMILY DNA-binding domain 167 236 IPR016177 GO:0003677
Accr12g01171 569 SMART rav1_2 270 334 IPR001471 GO:0003700|GO:0006355
Accr12g01171 569 SMART rav1_2 168 240 IPR001471 GO:0003700|GO:0006355
Accr12g01171 569 Gene3D AP2/ERF domain 168 236 IPR036955 GO:0003700|GO:0006355
Accr12g01171 569 Gene3D AP2/ERF domain 270 330 IPR036955 GO:0003700|GO:0006355
Accr12g01171 569 PRINTS Ethylene responsive element binding protein signature 310 330 IPR001471 GO:0003700|GO:0006355
Accr12g01171 569 PRINTS Ethylene responsive element binding protein signature 169 180 IPR001471 GO:0003700|GO:0006355
Accr12g01171 569 CDD AP2 269 330 IPR001471 GO:0003700|GO:0006355
Accr12g01171 569 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 114 452 - -
Accr12g01171 569 MobiDBLite consensus disorder prediction 343 400 - -
Accr12g01171 569 CDD AP2 167 236 IPR001471 GO:0003700|GO:0006355
Accr12g01171 569 FunFam AP2-like ethylene-responsive transcription factor 269 330 - -
Accr12g01171 569 SUPERFAMILY DNA-binding domain 269 330 IPR016177 GO:0003677
Accr12g01171 569 MobiDBLite consensus disorder prediction 454 513 - -
Accr12g01171 569 FunFam AP2-like ethylene-responsive transcription factor ANT 167 236 - -
Accr12g01171 569 ProSiteProfiles AP2/ERF domain profile. 270 328 IPR001471 GO:0003700|GO:0006355
Accr12g01171 569 MobiDBLite consensus disorder prediction 136 160 - -
Accr12g01171 569 MobiDBLite consensus disorder prediction 356 371 - -
Accr12g01171 569 ProSiteProfiles AP2/ERF domain profile. 168 234 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g01171 Accr-Chr12 13228278 13231347 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g01171 115 428 AP2-EREBP Transcription Factor Family AT5G57390 68.693 2.65e-147 430
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Accr12g01171 AP2 4.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g01171 K09285 - gmx:100803558 577.785