Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g01154 ATGGGTCGAGCTCCATGCTGTGACAAAGCGAACGTGAAGAGAGGACCTTGGTCTCCAGAAGAGGATGCTATACTCAAAGCATATATCGATAAAAATGGAACTGGAGGCAACTGGATAGCTCTTCCTCAAAAAATTGGGCTGAAGAGGTGTGGGAAAAGTTGCAGACTAAGATGGTTAAATTACCTGAGGCCCAATATCAAGCATGGTGGTTTCACTGAAGAAGAAGACAACATCATTAGCAGCCTCTACATTAGCATTGGCAGCAGGTGGTCCATTATTGCAGCTCAGCTTCCTGGAAGAACAGACAACGACATCAAGAATTATTGGAACACAAGACTGAAGAAGAAACTACTAGGCAGGCGCAACAAAAAAGACAACACTTCATCAGATCATGACAACCCTAATAATTCTGATCACACCCTCAGCAACTCAGCTCTTGAAAGGCTTCAACTTCACTTGCAACTTCAAAACCCTAATCATAACAATAATAATTTCTCTTTCTACAACAACAATCCTTCCCTCTGGCCTAAGTTGCATCCTCTCCAACAAAAACTCATCTACAACACCCTACAATCCCTCAACCATACCTCTCATTTGACAACCATTCCACAAAAAGATAATACTCAACTTTACAATGAACCAGCTTCTTCTAATTACACTACTACTGATAATGATGATGCGGTTCAACCAGAAGGCGCCAAGATCAGCAACCGGCCGGCGGTGACCGGTAATCCAGTGGACATGGGCCGGGTTGATCAGTTCGATGTGGGAATGGATCAAATTTCTGCACTTCAAACTGAGCTTCATGAAATTCTCATGAGCGGTTACGTGGCAACATCGCCGCAGAAGCAGGAGGAGGAGAAGCAGGTGGGTGGTTATGGTTGTTTCGGAGAGATCATGAGTGGTTCTTCGTCGAAGGACAATTTGAGCTGGTGGTTTAATGATTTGGATGCCAAGTCTGCATCCTCTAACTCTTGGGATTCAACTACCACTACTCCTCAGATTCTTCAGCCAGGTGATCATGGGATGTTTCAAGATTATGAACTAGGTTATATTGTGTAG 1062 0.4388 MGRAPCCDKANVKRGPWSPEEDAILKAYIDKNGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFTEEEDNIISSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGRRNKKDNTSSDHDNPNNSDHTLSNSALERLQLHLQLQNPNHNNNNFSFYNNNPSLWPKLHPLQQKLIYNTLQSLNHTSHLTTIPQKDNTQLYNEPASSNYTTTDNDDAVQPEGAKISNRPAVTGNPVDMGRVDQFDVGMDQISALQTELHEILMSGYVATSPQKQEEEKQVGGYGCFGEIMSGSSSKDNLSWWFNDLDAKSASSNSWDSTTTTPQILQPGDHGMFQDYELGYIV 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g01154 353 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Accr12g01154 353 SMART sant 67 115 IPR001005 -
Accr12g01154 353 SMART sant 13 64 IPR001005 -
Accr12g01154 353 Gene3D - 70 143 - -
Accr12g01154 353 MobiDBLite consensus disorder prediction 119 141 - -
Accr12g01154 353 CDD SANT 71 113 IPR001005 -
Accr12g01154 353 MobiDBLite consensus disorder prediction 320 339 - -
Accr12g01154 353 PANTHER OS09G0431300 PROTEIN 1 330 - -
Accr12g01154 353 MobiDBLite consensus disorder prediction 205 246 - -
Accr12g01154 353 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Accr12g01154 353 FunFam Transcription factor MYB36 70 139 - -
Accr12g01154 353 CDD SANT 16 62 IPR001005 -
Accr12g01154 353 MobiDBLite consensus disorder prediction 320 338 - -
Accr12g01154 353 FunFam Transcription factor RAX3 7 68 - -
Accr12g01154 353 MobiDBLite consensus disorder prediction 205 227 - -
Accr12g01154 353 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Accr12g01154 353 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Accr12g01154 353 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Accr12g01154 353 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Accr12g01154 353 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Accr12g01154 353 Gene3D - 7 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g01154 Accr-Chr12 13112950 13114921 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g01154 1 220 MYB Transcription Factor Family AT5G57620 66.102 4.21e-97 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Accr12g01154 Myb_DNA-binding 2e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g01154 K09422 - gmx:778083 363.614