Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g01138 ATGAGTTTCCTCCCTAATACTTCTCTTCACTTAAATCTCCCAGCAGACGACAATAGTAATGCTTCATTACTGAACCTAAATTTTCTTCTTGAGCCTTCTTCTTCTTCTGCAGGTTCCAACTCCAAGGAGCCCAGAGTATTTTCGTGCAATTATTGCCAGCGAAAATTCTACAGCTCTCAAGCTCTAGGGGGTCACCAAAATGCTCACAAGCTTGAACGAACCCTAGCCAAGAAAAGCAGAGAGCTAATAAGTAGTTCTACTTCTTCTTCTTCCATTAATGATCCTTACAACAATAATAATGGCGGATCAGGAGGAGGATTCAACCCTTATCTCGTCCATCGGGTCCGGTCATCAGATATTGGCGTGTTCGCGAACCAAGGTCAAGGTGGTGGAAGGACGGCCACGAGGGATTTTAGCTATGGTTCCAAGGAAAATCTTCAGGAGGATATTAACCAGCTTGACCTCTCTTTAAGGCTCTAG 480 0.4417 MSFLPNTSLHLNLPADDNSNASLLNLNFLLEPSSSSAGSNSKEPRVFSCNYCQRKFYSSQALGGHQNAHKLERTLAKKSRELISSSTSSSSINDPYNNNNGGSGGGFNPYLVHRVRSSDIGVFANQGQGGGRTATRDFSYGSKENLQEDINQLDLSLRL 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g01138 159 FunFam Zinc finger protein 2 29 94 - -
Accr12g01138 159 ProSiteProfiles Zinc finger C2H2 type domain profile. 47 74 IPR013087 -
Accr12g01138 159 SUPERFAMILY beta-beta-alpha zinc fingers 44 74 IPR036236 -
Accr12g01138 159 ProSitePatterns Zinc finger C2H2 type domain signature. 49 69 IPR013087 -
Accr12g01138 159 MobiDBLite consensus disorder prediction 79 108 - -
Accr12g01138 159 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 16 96 IPR044246 GO:0009788
Accr12g01138 159 Gene3D Classic Zinc Finger 19 102 - -
Accr12g01138 159 MobiDBLite consensus disorder prediction 80 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g01138 Accr-Chr12 12779822 12780301 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g01138 1 159 C2H2 Transcription Factor Family AT5G57520 47.674 7.27e-32 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Accr12g01138 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g01138 - - rcu:8278136 132.494