Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g01130 ATGGGAATCGAGAGGGGAAGTCTCAAGGGTCTTCGTGGCAGCTGGACGTTGCCACCGAAGCCCTGTGACTCTTGCAAATCGGCGGCCGCCGCGGTTTTCTGCCGAGCTGACTCTGCTTTCCTGTGTATGCTCTGTGACAACAAGATTCACTCCGCCAATAAGCTTGCGTCCCGTCATGAGCGTGTGTGGATGTGCGAGGTTTGCGAGCAAGCCCCTGCCTCCGTCACGTGCAAGGCCGACGCTGCTGTGCTCTGCGCCACTTGCGATTCGGATATCCACTCCGCTAATCCGCTGGCTCGCCGTCACGAGCGTGTTCCCGTGGAGCCTTTCTTCGATCCCGTTGACTTTGTAGCGAAATCTTCCGCTGCTGCCTTTAATTTGTTGGTTCCAAATGATAACGGAATTGAATTCCCTCAGGAAGAATCCGAATCAGCGTCATGGCTAATTTCTAATCCAAATTTCAACCCAAAGATCATGGATGTTCCGGATATCAAACCGGGAGAGTTTTTTTTCCCTGAAATGGAGTATCCATGCCTTGATTTCGATTACTCAAACTCATTCGATCAGAATAACAACATAGCGGGGAACAACGACAGCGTAGTTCCCGTTCAAGCTTTGATTATGAATCACACAGAGAATTGCTTCGACATCGATTTTTGCAGATCGAAGCTCTCTTCAATTAGCCATCCAAAGCAGTCGTTTAGTCGCCAAAGTATATCTTCTTCTTCGGTTGATGTTGGAGTGGTGCCGGACGGAGGAAACACGGTGTCAGAAATCTCGTTACCGTTCGGCGGCAACATGAGTAACAGCTCGGAATCAAGCGGAATCATATCGGCCGGCAATTCCACAAACCAATCGGTAAGTTCGCTGAGTGGTATGAACCGAGAAGCTCGGGTTTTGAGATACAGGGAGAAGAGGAAGAACCGGAAGTTTGAGAAAACCATCCGATACGCTTCGCGAAAGGCTTATGCAGAAACTCGACCGAGGATCAAAGGCCGGTTCGCCAAACGGACCGAAATGGAGTCGGATTTCGACCAATTATTCAGCTCGGTCGACCCCACCCCAGATCTATTGCTTGATACTCAGTACGGCGTCGTTCCCTCGTTTTAG 1110 0.5027 MGIERGSLKGLRGSWTLPPKPCDSCKSAAAAVFCRADSAFLCMLCDNKIHSANKLASRHERVWMCEVCEQAPASVTCKADAAVLCATCDSDIHSANPLARRHERVPVEPFFDPVDFVAKSSAAAFNLLVPNDNGIEFPQEESESASWLISNPNFNPKIMDVPDIKPGEFFFPEMEYPCLDFDYSNSFDQNNNIAGNNDSVVPVQALIMNHTENCFDIDFCRSKLSSISHPKQSFSRQSISSSSVDVGVVPDGGNTVSEISLPFGGNMSNSSESSGIISAGNSTNQSVSSLSGMNREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTEMESDFDQLFSSVDPTPDLLLDTQYGVVPSF 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g01130 369 CDD Bbox1_BBX-like 65 107 - -
Accr12g01130 369 SMART bboxneu5 17 64 IPR000315 GO:0008270
Accr12g01130 369 SMART bboxneu5 65 107 IPR000315 GO:0008270
Accr12g01130 369 Pfam CCT motif 295 337 IPR010402 GO:0005515
Accr12g01130 369 CDD Bbox1_BBX-like 21 64 - -
Accr12g01130 369 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 21 350 IPR045281 GO:0009909
Accr12g01130 369 ProSiteProfiles CCT domain profile. 295 337 IPR010402 GO:0005515
Accr12g01130 369 Pfam B-box zinc finger 62 107 IPR000315 GO:0008270
Accr12g01130 369 Pfam B-box zinc finger 20 61 IPR000315 GO:0008270
Accr12g01130 369 ProSiteProfiles Zinc finger B-box type profile. 60 107 IPR000315 GO:0008270
Accr12g01130 369 ProSiteProfiles Zinc finger B-box type profile. 22 64 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g01130 Accr-Chr12 12577021 12578227 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g01130 1 369 C2C2-CO-like Transcription Factor Family AT5G57660 50.785 2.63e-109 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Accr12g01130 zf-B_box 3.4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g01130 - - gmx:100805693 470.7