Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g01128 ATGGCCAAACCAGATCATTATTACCATAGTTACCTTATAATGATTTATTGTGTTGTTGTGTTGTTAACAGCTCAGATTCGAGGAAGCGACGATGAGGCAGGGTCGTCACTCCTGGGAGGGAAGAAGTTGATAATTGGTGTTCCTAAGAAAGTAACCTTCATCCAATTTGTGGATACACAACTGAATCCTTTGAACAACACACAGCTTGTGAAAGTTACTGGCTATTGTATTGACGTTTTCTTGGCTGCCATAGCTTACCTTCAGCGTTCAAATTACAATATTTCTTTTGAGTTTCGTGCTTCTGTGGACAACAATGGAAACACTATTTGGGGTTACGATGGTCTCATCTACCAGGTTCACCAAGGAAAGTACGATGCTGCAGTGGCAGATTTGACGATTGTGGCAAATAGGTCAAACTTCGTAGATTTTACGTTGCCATATGCACAGTCTGATGTGAGGATGCTCGTGAAAGTTCGACGTGGTCATCGCTTGAACATGTGGATTTTTGTACGGCCGTTTAGCTGGGACATGTGGTTGTGCATTGTCTTGGTCTTTATTTTTACAGGGGCTGTCATAGTCTTCATGGAACGCAATGCCAATAATAAGGAAGATTCAACACTTAGAAAGTCTCCCATCAAGAAACAATTTAGTGGGATTTCTATCCTCTGGTTTCCCATAGTGCAAGCAGTTTTTCCTGAAAGAAAATCATTGGCCAAGAATTGCTCTAGGTTTGTGCTCGTGTTGTGGTTGATTCTAGTATTTGTACTGATGCAAAGTTACTCAGCATGCTTGTCTTCAATCTTGACAGTACATCAGCTCCAATCTCGTTACCCTAGTGAGTATGAAATTAGAACTGACCCCAACATTTACGTAGGATACCACTATGGCTCATTCATCGACGGCTTATTGGTCGATAGCTTGAAGGTTGATAGGTCAAGGTTGAAGGATTATGCTGGCATCAAACAATATAAGGAGGCTTTAGATAAAGGAAGCCGTAACGGTGGTGTGGATGCCATTTTTGATGAAGTTCCCTACATTAAAGTCTTCCTTAAGGAATATGGTTCCAATTATGCCATGGTAGGGCCTAGGCATCGCACCGCTGGATTTGGCTTTGCATTTAGTAAGAATTCCACGTTATTAACCTCGCTCTTTTCTCAAGCCATACTAAATGTAAGTGAGAGCAATGAAATGGACGAGATTGAGGAGAGATATTTTAAAGGTCATGGCGATGAAGATGGCATATCTACTCCAACAACGTTAGATGATGATAGTGACAGCCTCACCCCATATAGCTTTGCCGGGTTGTTTGTGGTATTTGGAATTCTTTCACTGTTAGCTTTGTTAGTCTCCAAACATCGTATTTGGAGAAGACAATTTATGCTTATGAAAATGTCTAGCAAAAAATTCTTGCGCTGTCAGAGTTCTCCGGTAACTATTATATCAGAAGAAGGTTCGACACCAACAAGAAGAAATGTTGATGATGATGATAGAGGAGGTTCTAGAAGCAGAGAAAATATTGTATCAGGACGACATGCAGAATATAACCACGCAAGGATATTAGTCGCATCTCTTCCCTAA 1578 0.4094 MAKPDHYYHSYLIMIYCVVVLLTAQIRGSDDEAGSSLLGGKKLIIGVPKKVTFIQFVDTQLNPLNNTQLVKVTGYCIDVFLAAIAYLQRSNYNISFEFRASVDNNGNTIWGYDGLIYQVHQGKYDAAVADLTIVANRSNFVDFTLPYAQSDVRMLVKVRRGHRLNMWIFVRPFSWDMWLCIVLVFIFTGAVIVFMERNANNKEDSTLRKSPIKKQFSGISILWFPIVQAVFPERKSLAKNCSRFVLVLWLILVFVLMQSYSACLSSILTVHQLQSRYPSEYEIRTDPNIYVGYHYGSFIDGLLVDSLKVDRSRLKDYAGIKQYKEALDKGSRNGGVDAIFDEVPYIKVFLKEYGSNYAMVGPRHRTAGFGFAFSKNSTLLTSLFSQAILNVSESNEMDEIEERYFKGHGDEDGISTPTTLDDDSDSLTPYSFAGLFVVFGILSLLALLVSKHRIWRRQFMLMKMSSKKFLRCQSSPVTIISEEGSTPTRRNVDDDDRGGSRSRENIVSGRHAEYNHARILVASLP 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g01128 525 Gene3D - 313 366 - -
Accr12g01128 525 Pfam Ligand-gated ion channel 407 441 IPR001320 GO:0015276|GO:0016020
Accr12g01128 525 SMART GluR_14 42 407 IPR001320 GO:0015276|GO:0016020
Accr12g01128 525 FunFam Glutamate receptor 321 369 - -
Accr12g01128 525 SUPERFAMILY Periplasmic binding protein-like II 23 406 - -
Accr12g01128 525 CDD GluR_Plant 41 405 - -
Accr12g01128 525 Gene3D - 367 405 - -
Accr12g01128 525 Gene3D - 35 167 - -
Accr12g01128 525 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 39 457 IPR015683 -
Accr12g01128 525 MobiDBLite consensus disorder prediction 483 507 - -
Accr12g01128 525 Gene3D - 168 286 - -
Accr12g01128 525 Pfam Bacterial extracellular solute-binding proteins, family 3 100 406 IPR001638 -
Accr12g01128 525 MobiDBLite consensus disorder prediction 487 507 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g01128 Accr-Chr12 12525041 12529117 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g01128 40 449 Ion Channels AT2G29120 39.416 6.82e-75 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g01128 K05387 - pcin:129319224 709.523