Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g01127 ATGGCTAAGTTCTTGAAGTGCCTTCTCTTTTGGCTTCTTATGCAGCTTCTTCAGCTACAAAACTCCCAAACTGTGAGTGGTGAGTCGTCACCTAATTTGATCATGAGAATAGGAGTACCAAAGAAAGACGGTTTCAGTCAATTTGTGCAATTACGTTGGCAACCTCGTGAAAATAAGTACATAGTCTCTGGAGGGTATTGCATAGATGTCTTCAATGCCGTAATAAAGCAATTACCTTTCAAGGTTTCTCCTCAGTTTACTCCTTTCGTCAATCAAACAGGACAAAGTGCAGGCACATACGATTCACTCGTCCAACAAATCCCTCAAACGTACGATGCTGTAGTTGGAGACGTGACGATCGTGGCAAACCGTTCAAGGTTTGTGGACTTTTCGTTGCCATACGCAGAGACTGGAGTGTCGATGTTGGTAAAAGTTCAACATGAGAGGCACCTAACTATGTGGATTTTTGTGAAACCCTTTAGTTGGGGCTTGTGGCTTAGCATAGCCATCGTTTCTATCTTCATTGGTTTCGTCATATCAATTATGGAGCGAAATGTGAACAATTTGCCTGAGAGAGGGTCCCAAACTTCAACCAAACAGCTCAACGTAGTCACCATTCTTTGGTTTCCACTATCACAGGCCGTTCTTCCCGATCGAGAGGTTGTAGTGAAGAGCTGCTCGAGATTTGTGTTAATGGTTTGGCTACTATTAGCGTTCGTGCTCATGCAAAGTTACACTGCAAGCTTGACATCGATATTAACAGTGGATCAGCTACAACCTAGTTTTCTGAATGTGAACGATCTTAGAAATGGGAATTATTATGTTGGCTATCAAGCAAACTCTTTCGTGAGGGATCTTTTAGTGCAAAGATTAAATCTTGATCCCTCCAAGCTAAGGGCTTATAGTAACCTTTCAGAATATCACCATGCTTTAGCAAAAGGAAGCCAAGGAGGTGGTGTCGCAGCTATATTTGATGAAATCCCTTTTCTTAAACTTTACCTCAATAAATATGGATCTAATAACTACATGATGGCTGGATCAACCTATCGAACAGATGGTTTTGGCTTTGCATTCCCGTTTGGCTCTAATTTAACCTCTCACTTTTCAAGAGCTATCTTGAATGTGACTGAGAGTGATATAATGGATCGTATTCAAAAAAAGTATTTTGGGGAAGATGATAGTGGAGGAACTGGGCAAGTGTCGTCGTCGTCAACAACTACAGCGAGCCTCACTTTTCATAGCTTTCAAGGGCTTTTCTTGGTCACAGGAATTGTTACAGTAATGGCACTGATAGTCTCAGAAAGTGTTATTTGGCAAAAACCCATTTCAATGGCTAGAGCTTATAGCGAGAGGTATTTGTTCCGCAGCAGTAGTACTCCTCCACGTTCCAGAGATAACAGTGTTAGTTCACCCGGCTGA 1419 0.4193 MAKFLKCLLFWLLMQLLQLQNSQTVSGESSPNLIMRIGVPKKDGFSQFVQLRWQPRENKYIVSGGYCIDVFNAVIKQLPFKVSPQFTPFVNQTGQSAGTYDSLVQQIPQTYDAVVGDVTIVANRSRFVDFSLPYAETGVSMLVKVQHERHLTMWIFVKPFSWGLWLSIAIVSIFIGFVISIMERNVNNLPERGSQTSTKQLNVVTILWFPLSQAVLPDREVVVKSCSRFVLMVWLLLAFVLMQSYTASLTSILTVDQLQPSFLNVNDLRNGNYYVGYQANSFVRDLLVQRLNLDPSKLRAYSNLSEYHHALAKGSQGGGVAAIFDEIPFLKLYLNKYGSNNYMMAGSTYRTDGFGFAFPFGSNLTSHFSRAILNVTESDIMDRIQKKYFGEDDSGGTGQVSSSSTTTASLTFHSFQGLFLVTGIVTVMALIVSESVIWQKPISMARAYSERYLFRSSSTPPRSRDNSVSSPG 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g01127 472 CDD GluR_Plant 36 389 - -
Accr12g01127 472 SMART GluR_14 36 391 IPR001320 GO:0015276|GO:0016020
Accr12g01127 472 FunFam Glutamate receptor 34 153 - -
Accr12g01127 472 SUPERFAMILY Periplasmic binding protein-like II 61 392 - -
Accr12g01127 472 Gene3D - 154 290 - -
Accr12g01127 472 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 33 440 IPR015683 -
Accr12g01127 472 Gene3D - 330 395 - -
Accr12g01127 472 Pfam Ligand-gated ion channel 392 424 IPR001320 GO:0015276|GO:0016020
Accr12g01127 472 Pfam Bacterial extracellular solute-binding proteins, family 3 65 391 IPR001638 -
Accr12g01127 472 Gene3D - 30 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g01127 Accr-Chr12 12519393 12522604 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g01127 35 460 Ion Channels AT5G11210 37.617 1.37e-87 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g01127 K05387 - gmx:100807817 540.806