Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g01124 ATGGCAAACCCAAATTACTATTTCTATGGCTTCATCATTATGATTTATTGTGTTGTGTTGTTAATAGCTCCGATTAGTGCAGGAGATGATGCAGGGACGTCATTCCTGGGAGGGAAGAAATTGATAATTGGACTTCCTTATAATTCAGGCTATGCCCAGTTTGTGGATATTAGACAACTCAATTCTACTAATGACAATCATCAGGTCGTCCAGGTTAGGGGCTATTCTATTGACGTTTTCGAAGCTAAAATAGCCTACCTCGAGCGTCAACATTACAGTATTTCTTTCGAGTACAGAGTTTTCGTAAACGGCGATGGAAACAATGCTGGGGATTACAACGAACTTGTCAGCCAAATTTCTGAAGAAAAGTATGATGCTGTGGTTGGAGATGTGACGATTTTGGCAAATCGGTTGGACGATGCAGATTTTACGGTACCATATACACATTCTAATAATGTGAAGATGCTTGTAAAGATTCGACATGACCCTCGGTTGAATATGTGGATTTTTGTGCGACCGTTTAGTTGGAGTCTTTCGTTGTGTATTGCTAGCAACTCCATATTTATAGGAGCTATCATACTATTCATGGAACGTAATGTCCAAAGAGATTCAACTCTTGAAAATTCACCATGTAGGAAACAATTCCGTGGGGTTTCTATCCTCTGGTTTCCTGTTGTGCAAGCAATTTTTCCTGAAAGAGAATCATTGGCGAAAAATTGCTCTAGGTTTGTGCTGGTGATGTGGTTGATACTGGTATTTGTGCTCATGCAAAGCTACACAGCATGCTTATCAACGATCTTAACAGTACATCAGTTACAACCTCAATACCTTAGTGAGAACGATGTTATAAAGGATCCCAACATTAACGTTGGATACAGAAGTGGCTCATTTGTGGGAGACTTATTGCCCATCAATAGGGCAAGGGTGAAGAACTACTCTTCCATTGAAGAATATAAGGATGCTTTAGACAAAGGAAGCCATAAAGGTGGTGTTGACGCTATTTTTGATGAAGCTCCCTACTTTAAAGTGTTCTTCAGCCATTATGGCTCCAATAATTATGCCGTTGTTGGAACCAGGCACCATGCTGGTGGATTTGGTTTTGCTTTTCCTAAGGGCTCCTCCTTAATCTCGTACTTTTCTAAAGCCATACTAAATATCAGCGAGAGTAATGAAATGGACAAAATTGAGGAGAGATATTTTGGGGGCAACGACGAATATGGTGAAAACCAATACATATCTAAATCATCGTCAATAGATGCAAGTCCTAGTCTTACTGCTTACAGCTTTGCAGGTTTGTTCATGGTTATTGGAACTCTTTCACTGTTAGCTTTGCTAATCTCTGAAAATCATATTTGGCGAAAACCTGTTATGCTCGCAAAAGCTTATAGCCAACAATTTTTTAGTTCGAATTCTTCAAGAATTAGTTCGTTAGATGAAGGTTCTACGACAAGATCAAATGTTGACAAACATTGTTCTGCAGATAATGGAACATTGCCTGTATAA 1503 0.3919 MANPNYYFYGFIIMIYCVVLLIAPISAGDDAGTSFLGGKKLIIGLPYNSGYAQFVDIRQLNSTNDNHQVVQVRGYSIDVFEAKIAYLERQHYSISFEYRVFVNGDGNNAGDYNELVSQISEEKYDAVVGDVTILANRLDDADFTVPYTHSNNVKMLVKIRHDPRLNMWIFVRPFSWSLSLCIASNSIFIGAIILFMERNVQRDSTLENSPCRKQFRGVSILWFPVVQAIFPERESLAKNCSRFVLVMWLILVFVLMQSYTACLSTILTVHQLQPQYLSENDVIKDPNINVGYRSGSFVGDLLPINRARVKNYSSIEEYKDALDKGSHKGGVDAIFDEAPYFKVFFSHYGSNNYAVVGTRHHAGGFGFAFPKGSSLISYFSKAILNISESNEMDKIEERYFGGNDEYGENQYISKSSSIDASPSLTAYSFAGLFMVIGTLSLLALLISENHIWRKPVMLAKAYSQQFFSSNSSRISSLDEGSTTRSNVDKHCSADNGTLPV 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g01124 500 Gene3D - 34 168 - -
Accr12g01124 500 Pfam Ligand-gated ion channel 402 437 IPR001320 GO:0015276|GO:0016020
Accr12g01124 500 MobiDBLite consensus disorder prediction 472 500 - -
Accr12g01124 500 SUPERFAMILY Periplasmic binding protein-like II 13 402 - -
Accr12g01124 500 Gene3D - 366 400 - -
Accr12g01124 500 Pfam Bacterial extracellular solute-binding proteins, family 3 111 401 IPR001638 -
Accr12g01124 500 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 37 454 IPR015683 -
Accr12g01124 500 Gene3D - 313 365 - -
Accr12g01124 500 SMART GluR_14 40 402 IPR001320 GO:0015276|GO:0016020
Accr12g01124 500 Gene3D - 169 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g01124 Accr-Chr12 12448550 12451165 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g01124 38 446 Ion Channels AT5G11210 33.012 2.15e-66 227
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g01124 K05387 - pcin:129319703 702.59