Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g01122 ATGGCAAACTCAAATTACCATTTCTATGGCTATAATAAGTACGTTGCCATGATAACTTTTGCAGTGTTGTTATTAATAGCTCAGATTCGAGCAGGCGATGATGGAGGCTCATTAATCATGGAAGGGAATAAGAAGTTGATAGTTGGTGTTCCTAAGAAATGTGGCTCAACAGATTCTTTCGTGGATTTAAAACTGGATTCTACAAATAAGAGTAAGGTCGAGCAGGCTCGGGGATATTCCATTGATGTTTTCAATGCTACAGTAGCCTTCCTTCAGAATATTTCTGTACAGTATGTGGCCTTTGCAAACGAAGATGGAAGTTGTGTTGAGGATTACGACGCACTCCTCGACCAGATCTCTAAAAGAAAGTACGATGCTGTGGTTGGAGATGTGACAATTGTGGCAAATCGTTCCGACTATGTAGATTTTACTTTACCTTACACAAGATCTGATGTGAAGATGCTTGTGAAGGTTCGACATGATCCGCGGTTACAGATGTGGATTTTTGTACGACCTTTTAATTGGGATCTATGGTTGTCCATTGCCTCCGTCAGTGTGTTTGTAGGAGGTATCATACTATTCATGGAACGGAAAGTTAAGCATGGTTCATCAGGACCTGAAAATTCGTCAAGTAAGAAGAAACTTAGTGGGTATCACACTATTCTATGGTTTCCCCTAGTGCAAGCAGTTCTTCCTGATAGGGAATCAGTGGTCAAGAATTGCTCCAGGTTTGTGCTTGTGTTGTGGTTGATTCTTGTATTTGTACTAATGCAAAGTTACACAGCATGCTTGTCATCAATCTTGACCGTACATCAGCTGCAACCTTATTACCCTAGTGAGTTTGATGTTATAAATGATCCCAACGTTAAGATTGGATACCTAGGTGGCTCATTCATCAAAGGCTTGTTGCTGGAGAGCTTAAACGTTGACAAGTCAAGGGTGAAGAACTATTCCACCATTGAACAATATAAGGATGCCTTAGATAAAGGAAGCCATAAAGGTGGTGTTGATGCTATTTTTGATGAAGTTCCCTACATTAAGATCTTCCTCAAAAAATACGATTCCAAGTATGCTATGATTGGCACGAGGCACCGTACTGATGGATTTGGTTTTGCATTCCCCAAAGGGTCCACCTTAACTTCACACTTTTCCAGAGCGGTATTGTATGTGTGTGAGAATATAGAAATGGATGAGATTGAGGAGAAATATTTTGGAAGCAGTAACAACGATGATGAAGGCCAAGACATATCTAATTCATCTTTAGATGATTCAAGTTCCAGCAGACTTAGTACTTATAGCTTTGCAGGTTTGTTTTTATTAATCGGAGTTCTTTCACTGTTAGCTTTAGCAGTCTCTGAAAGTTATATTTGGCGAAAACCTGTGATGCTAGCAAAAACTTACAGCCGACAAGTCTTGAGTCGTAGTTTTACTAGAACTTGTCCATCAGAAGAAGGTTCTACAACAAGAAGAAATGTTGATGAAGGTGGTTTTACAGCCAGAGAAAATAATCAAAACATAGGATTAAAAGATGGCGCAGATAACCATGGAGAAATCTCAAAGACATCTTCTCCGATGTGTGTTGATATTGAGACATTACCTATGTAA 1605 0.3944 MANSNYHFYGYNKYVAMITFAVLLLIAQIRAGDDGGSLIMEGNKKLIVGVPKKCGSTDSFVDLKLDSTNKSKVEQARGYSIDVFNATVAFLQNISVQYVAFANEDGSCVEDYDALLDQISKRKYDAVVGDVTIVANRSDYVDFTLPYTRSDVKMLVKVRHDPRLQMWIFVRPFNWDLWLSIASVSVFVGGIILFMERKVKHGSSGPENSSSKKKLSGYHTILWFPLVQAVLPDRESVVKNCSRFVLVLWLILVFVLMQSYTACLSSILTVHQLQPYYPSEFDVINDPNVKIGYLGGSFIKGLLLESLNVDKSRVKNYSTIEQYKDALDKGSHKGGVDAIFDEVPYIKIFLKKYDSKYAMIGTRHRTDGFGFAFPKGSTLTSHFSRAVLYVCENIEMDEIEEKYFGSSNNDDEGQDISNSSLDDSSSSRLSTYSFAGLFLLIGVLSLLALAVSESYIWRKPVMLAKTYSRQVLSRSFTRTCPSEEGSTTRRNVDEGGFTARENNQNIGLKDGADNHGEISKTSSPMCVDIETLPM 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g01122 534 Gene3D - 352 411 - -
Accr12g01122 534 Pfam Ligand-gated ion channel 406 442 IPR001320 GO:0015276|GO:0016020
Accr12g01122 534 SMART GluR_14 45 406 IPR001320 GO:0015276|GO:0016020
Accr12g01122 534 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 43 459 IPR015683 -
Accr12g01122 534 MobiDBLite consensus disorder prediction 404 426 - -
Accr12g01122 534 Gene3D - 166 316 - -
Accr12g01122 534 Gene3D - 41 165 - -
Accr12g01122 534 SUPERFAMILY Periplasmic binding protein-like II 19 406 - -
Accr12g01122 534 MobiDBLite consensus disorder prediction 482 521 - -
Accr12g01122 534 Pfam Bacterial extracellular solute-binding proteins, family 3 75 405 IPR001638 -
Accr12g01122 534 MobiDBLite consensus disorder prediction 409 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g01122 Accr-Chr12 12406905 12410361 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g01122 36 451 Ion Channels AT2G29120 40.528 1.78e-75 255
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g01122 K05387 - pcin:129319703 542.732