Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g01121 ATGGCAAACTCGAATTACCATTTCTATGGCGATGAGTACGTTATCATGATTTTTTTTGCAGTCTTGTTATTAACAGCTCAGATTGAAGCAGGTGATGATGAAGCAGGTTCACTAGTCATGGAAGGGAAGAAGAAGTTGATGGTTGGTGCTCCTAAGAAGTGTGGCACAATAGATTTTTTCGTGGATTTAAAACTGGATTCTAAAAATAAGAGTCAAGTCGAGAAGGCTCAGGGCTATTCCATTGATGTTTTCAATGCTACAAGAGCCTACCTTCAGGATGTTTCCGTAGAGTATGTGGCCTTTGCAAACGAAGATGGAAGTTGTGTTGAGAACTGTGACGCAATCCTCGACCATCTCTCTGAAACAAAGTACGACGTTGTGGTGGGAGATGTGACAATTATGGCAAAACGTTCCAACTGTGTAGATTTTACTTTACCGTATAAACAATCTGATCTGAAGATGCTTGTGAAGTTTCGACCTGATCCACGGTTAGTGTAA 498 0.4076 MANSNYHFYGDEYVIMIFFAVLLLTAQIEAGDDEAGSLVMEGKKKLMVGAPKKCGTIDFFVDLKLDSKNKSQVEKAQGYSIDVFNATRAYLQDVSVEYVAFANEDGSCVENCDAILDHLSETKYDVVVGDVTIMAKRSNCVDFTLPYKQSDLKMLVKFRPDPRLV 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g01121 165 Pfam Ligated ion channel L-glutamate- and glycine-binding site 66 157 IPR019594 GO:0004970|GO:0016020
Accr12g01121 165 SUPERFAMILY Periplasmic binding protein-like II 43 159 - -
Accr12g01121 165 Gene3D - 37 164 - -
Accr12g01121 165 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 41 160 IPR015683 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g01121 Accr-Chr12 12337416 12338427 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g01121 29 157 Ion Channels AT2G24710 35.385 1.45e-16 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g01121 K05387 - pcin:129302677 180.259