Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g01119 ATGGCGAACCCAAATTACTATTTCTATGGCTTCATCATTATGATTTATTGTGTTGTGTTGTTAATAGCTCCGATTAGTGCAGGAGATGATGCAGGGACGTCACTCCTGGGAGGGAAGAAATTGATAATTGGACTTCCTTATAATTCAGGCTATGCCCAGTTTGTGGATATTATACAACTCAATACTACTAATGACAATCATCAGGTCGTCCAGGTTAGGGGCTATTCTATAGACGTTTTCAAAGCTACAATAGCCTACCTCGAGCGCCAACATTACAATGTTTCTTTCGAGTTCAGAGCTTTCGTAAACGGCGATGGAAACAATGCTGGGGATTACAACGCACTTGTCCGCCAAATTTCTGAAGAAAAGTATGATGCTGTGGTTGGAGATGTGACAATTTTGGCAAATCGGTTGGACGATGCAGATTTTACGGTACCATATACACATTCTAATGTGAAGATGCTTGTAAAGATTCGACATGACCCTCGGTTGAATATGTGGATTTTTCTGCGACCGTTTAGTTGGAGTCTTTGGTTGTGTGTTGCTATCAACTCCATATTTATAGGAGCTATCATACTATTCATGGAACGTAATGTCCAAAGAGATTCAACTCTTGAAAATTCACCATGTAGGAAACAATTCAGTGGGGTTTCTATCCTCTGGTTTCCTGTTGTGCAAGCAATTTTTCCTGAAAGAGAATCATTGGCCAAAAATTGCTCTAGGTTTGTGCTGGTGATGTGGTTGATACTGGTATTTGTGCTCATGCAAAGCTACACAGCATGCTTATCATCAATCTTAACAGTACATCAGTTACAACCTCAATACCTTAGTGAGAACGATGTTATAAAAGATCCCAACATTAATGTTGGATACAGAAGTGGCTCATTTGTGGGAGACTTATTGCCCATCAATAGGGCAAGGGTGAAGAACTACTCTTCCATTGAAGAATATAAGGATGCTTTAGACAAAGGAAGCCACAAAGGTGGTGTTGATGCTGTTTTTGATGAAGCTCCCTACTTTAAAGTCTTCTTCAGCCATTATGGCTCCAATGATTATGCCGTGGTTGGAACCAGGCACAATGCTGGTGGATTTGGTTTTGCTTTTCGTAAGGGCTCCACCTTGATCTCGTACTTTTCTAAAGCCATACTAAATATCAGCGAGAGTAATGAAATGGACAAAATTGAGGAGAGATATTTTGGGGCCAACGACGAATATGGTGAAAACCAATACATATCTAAATCATCGTCAATAGATGCAAGTCCTAGTCTTACTGCTTACAGCTTTGCAGGTTTGTTCATGGTTATTGGAACTCTTTCACTGTTAGCTTTGCTAATCTCTGAAAATCATATTTGGCGAAAACCTGTTATGCTCGCAAAAACTTATAGCCAACAATTTTTTAGTTCGAATTCTTCAAGAATTAGTTCGTTAGAGGAAGGTTCTACGACAAGATCAAATGTTGACAAAAAATGTTCTGCAGATAATGGAACATTACCTGTATAA 1500 0.3933 MANPNYYFYGFIIMIYCVVLLIAPISAGDDAGTSLLGGKKLIIGLPYNSGYAQFVDIIQLNTTNDNHQVVQVRGYSIDVFKATIAYLERQHYNVSFEFRAFVNGDGNNAGDYNALVRQISEEKYDAVVGDVTILANRLDDADFTVPYTHSNVKMLVKIRHDPRLNMWIFLRPFSWSLWLCVAINSIFIGAIILFMERNVQRDSTLENSPCRKQFSGVSILWFPVVQAIFPERESLAKNCSRFVLVMWLILVFVLMQSYTACLSSILTVHQLQPQYLSENDVIKDPNINVGYRSGSFVGDLLPINRARVKNYSSIEEYKDALDKGSHKGGVDAVFDEAPYFKVFFSHYGSNDYAVVGTRHNAGGFGFAFRKGSTLISYFSKAILNISESNEMDKIEERYFGANDEYGENQYISKSSSIDASPSLTAYSFAGLFMVIGTLSLLALLISENHIWRKPVMLAKTYSQQFFSSNSSRISSLEEGSTTRSNVDKKCSADNGTLPV 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g01119 499 Gene3D - 360 400 - -
Accr12g01119 499 Gene3D - 33 166 - -
Accr12g01119 499 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 37 453 IPR015683 -
Accr12g01119 499 Gene3D - 167 293 - -
Accr12g01119 499 SMART GluR_14 40 401 IPR001320 GO:0015276|GO:0016020
Accr12g01119 499 Gene3D - 306 359 - -
Accr12g01119 499 Pfam Ligand-gated ion channel 401 436 IPR001320 GO:0015276|GO:0016020
Accr12g01119 499 Pfam Bacterial extracellular solute-binding proteins, family 3 72 400 IPR001638 -
Accr12g01119 499 MobiDBLite consensus disorder prediction 477 499 - -
Accr12g01119 499 SUPERFAMILY Periplasmic binding protein-like II 12 401 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g01119 Accr-Chr12 12305608 12308221 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g01119 38 445 Ion Channels AT5G11210 34.063 1.12e-69 236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g01119 K05387 - pcin:129319703 715.687